PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT33413 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 442aa MW: 48820.9 Da PI: 9.0203 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 41 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F++ L H+++H EMT33413 41 HVCNKCYKNFPSGRALGGHMSLH 63 79******************998 PP | |||||||
2 | zf-C2H2 | 19.7 | 2.3e-06 | 103 | 124 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k+Fs ++L++H+r H EMT33413 103 QCQLCSKVFSACDSLRKHMREH 124 7*******************99 PP | |||||||
3 | zf-C2H2 | 15.1 | 6.5e-05 | 356 | 378 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ CgksF + s L H+r H EMT33413 356 HQCNACGKSFGSGSALGGHMRWH 378 79*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 2.5 | 41 | 63 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.1E-8 | 41 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.596 | 102 | 129 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.034 | 102 | 124 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.09E-10 | 103 | 124 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 103 | 125 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.2E-5 | 103 | 126 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 104 | 124 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.09E-10 | 351 | 378 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.7E-6 | 354 | 378 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.0E-7 | 355 | 379 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.9 | 356 | 378 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.803 | 356 | 383 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 358 | 378 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MVGQTRGLSG QHARTGPFGH LWRQATTCFT DMAPRGRPPK HVCNKCYKNF PSGRALGGHM 60 SLHWRKVKQP KGTPSPPATV VDLNVSLLSP SDEETFLRSS GTQCQLCSKV FSACDSLRKH 120 MREHREKNVL SKPAEEAAGL MEARVIAGGG CNVLLSPVKR KRSKRGVPPL KFNEMDAAAS 180 LLLLSEHSSK ISAYEDCYTE VMDSFAPNVS KDVKLNAFDH QLVRSAEFKK PKGCKCSAYD 240 IFYGQCVKDN NLIPNVAKEK TSIPNIAKNS ACEDCFGQCE KDSSLIPNVE LKERSLIANV 300 PEKDNTLISI VLEEVELNVL DHVLAGDAEL RKKQRTDNSV EMKRADLSAA VKVKRHQCNA 360 CGKSFGSGSA LGGHMRWHLP RSNDRRHGFA ESPDSVAMKE QKQKLELDTK FLDLQLPGLT 420 DITIFSGLKS EPEPWRVASS VH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249628 | 0.0 | AK249628.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf40p20, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164841.1 | 0.0 | uncharacterized protein LOC109750291 | ||||
TrEMBL | N1R4D1 | 0.0 | N1R4D1_AEGTA; Uncharacterized protein | ||||
STRING | EMT33413 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9112 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26590.1 | 8e-07 | C2H2-like zinc finger protein |