PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33131
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 266aa    MW: 29384.6 Da    PI: 8.456
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33131genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-09533129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     +++WT eE+e l ++v ++G g W+tI +
         EMT33131  5 KQKWTSEEEEALRRGVLKHGAGKWRTIQK 33
                     79*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.434161IPR017930Myb domain
SuperFamilySSF466891.25E-10250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-10550IPR009057Homeodomain-like
PfamPF002492.2E-6533IPR001005SANT/Myb domain
CDDcd116601.39E-14650No hitNo description
PROSITE profilePS5150417.031101169IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.7E-11104174IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.56E-12105174IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.3E-5105164IPR005818Linker histone H1/H5, domain H15
PfamPF005387.1E-7105161IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGAPKQKWTS EEEEALRRGV LKHGAGKWRT IQKDPEFSPV LSSRSNIDLK PFGHRRMPSD  60
SRTGDMGVDL GVQKGSKVMP LGVLVSWGFG GVGVLPFEEH EDNMYSSMIL EALGELKEPN  120
GSEVATICNF IEQRHEVQPN FRRLLCAKLR RLIGVNKVEK IDKSYKLTDS YAKRALAPMK  180
DPSLKKKDSA KSSKAAKGLG QSSPALDAAE AAAMKVADAE AKSHLANEHM MEVERIGKMA  240
EETESLLELA SELYERCMPY SSSSNF
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-142HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159636.11e-117single myb histone 4-like isoform X1
SwissprotQ6WLH43e-77SMH3_MAIZE; Single myb histone 3
TrEMBLM8D9B80.0M8D9B8_AEGTA; Histone H1
STRINGEMT331310.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.22e-33MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]