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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT33086 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 331aa MW: 36192.8 Da PI: 6.0506 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.5 | 2.7e-12 | 28 | 72 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky EMT33086 28 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 72 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.36E-16 | 22 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.18 | 23 | 77 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-6 | 26 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-18 | 26 | 75 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.5E-10 | 27 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-10 | 28 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.33E-7 | 30 | 73 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MAVPADAAAA AEDARMKVRK PYTITKSRES WTEPEHDKFL EALQLFDRDW KKIEAFVGSK 60 TVIQIRSHAQ KYFLKVQKNG TGEHLPPPRP KRKAAHPYPQ KASKTAPVAP QAVLSQQPAP 120 PPPPPREQDG VDVSMDASMV VPNTNANAVV PSWDNALVQP TQVTSAIATN NCSSSIESQS 180 GTWPTSEAVE QENVLPQMRA MPDFSQVYNF LGSVFDPDTT GHLQRLKAMD PIDVETVLLL 240 MRNLSVNLIN PEFEAHQVSV SAMEAHQRQL LSSYGSGGDE NKPEGMENFG SQSSHLPSIS 300 GGTLKSVDLV SASELKQEHQ LVGLIKANEK D |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00625 | PBM | Transfer from PK02532.1 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360696 | 0.0 | AK360696.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1123J21. | |||
GenBank | AK376956 | 0.0 | AK376956.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3144K07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178881.1 | 0.0 | protein REVEILLE 8-like isoform X1 | ||||
Swissprot | Q8H0W3 | 6e-91 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | M8D975 | 0.0 | M8D975_AEGTA; Myb-like protein G | ||||
STRING | EMT33086 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1096 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 1e-74 | MYB_related family protein |
Publications ? help Back to Top | |||
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