PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33019
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 598aa    MW: 64997.9 Da    PI: 6.2
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33019genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.4e-185015881495
               T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEE CS
        B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvk 95 
               + lv+ k+fa+++   + k++++ l+led++   W v+li  + +s++ +lt+GW++Fv +ngLk gD ++F+ d  ++ ++ +++v 
  EMT33019 501 CALVFCKEFASACglPHTKKTTIHLQLEDKTKGPWPVTLIRsEHNSNQRWLTTGWNKFVTDNGLKKGDACLFQPDksNNtQGLSMTVY 588
               889**********5533444666788999999*******77788888899***********************763233344455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-17473593IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-16478580IPR015300DNA-binding pseudobarrel domain
CDDcd100172.55E-17482591No hitNo description
SMARTSM010191.8E-8484593IPR003340B3 DNA binding domain
PROSITE profilePS5086311.476488593IPR003340B3 DNA binding domain
PfamPF023623.8E-15501592IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MAGSGSDSGQ YGSVDWGVIP CWLEEAMTVR IALRRSWEDN AWPTAGSVRS IIRLAKVSPT  60
AHFYKNKCGA AAAKLAVWCW MWGMHDNSDD AGDGNKQFHL VASADFSHDT RMPGEFGSHL  120
MNITPESDLV KLVAHDEPIS DSNQCEANGG SASDTDMQLE VTLSTLAIQF FCRFYENVHM  180
RGLTWQDDEY MQWVSGYHHI ERTKGLSARF MNELIGVGCY SYFPFGPFGP GSTVITIPES  240
AWAEISVGLQ SMLITMLDSF LRPEHSNAMG LNNSACTLPP ESVCVLVDVA VSSSVLADVA  300
VSDTSMFDAA MPEFATVSEG VMAAAVVSNT AVSDGIMATA AVSDTAVSAR VLNSTAVPDV  360
MTDIHEAAGG NTVKKRSRSE VAVVTEHGRG PHSDKEGCAP MELPSENPKR KKSSVVMTTG  420
QQCLQISAVQ QMGVEQCGIE VCSNNLMGPS QRPYILPKKT TLPSELEKKV KEKVKPIQSK  480
LPIFVRELKT YSVVGTGQGG CALVFCKEFA SACGLPHTKK TTIHLQLEDK TKGPWPVTLI  540
RSEHNSNQRW LTTGWNKFVT DNGLKKGDAC LFQPDKSNNT QGLSMTVYLI RKSSEKEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176311.10.0uncharacterized protein LOC109761911
TrEMBLM8CF010.0M8CF01_AEGTA; B3 domain-containing protein
STRINGEMT330190.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4962922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-07B3 family protein