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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32903 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | CPP | ||||||||
Protein Properties | Length: 744aa MW: 79859.8 Da PI: 6.7175 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.4 | 9.1e-16 | 456 | 495 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk + EMT32903 456 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 495 689**********************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.1E-15 | 455 | 496 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 15.674 | 456 | 524 | IPR005172 | CRC domain |
Pfam | PF03638 | 7.9E-12 | 458 | 493 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 744 aa Download sequence Send to blast |
MDTPDRPRAG AAAGFEDSPV FNFINNLSPI PPPKPQDSSH NVHLFKSSDL APVSSIFASP 60 HVNPPKESKL LIRDDSVQLS QDSNSPNSVR TRLGSAIRLI KCKNIVSENC SFTCHLNQGP 120 MDSSANRSNS TSKLPQTIQF VGDSSECGKN QNADSKKDLA RDQESIELEG VLLDHTGPDK 180 IDSSQPGRTV HENQQCEQQK DGFTAYDGDY LITHESSMDM LRLAPPCEAD TQLVNETLNA 240 DNVFSGNSLL TDGPSGSYIN NAAHDPNLYW DGTVEGPTTD YTPQLLPGAC QSQSVSNDQI 300 CNAVEEPSDH IPIDQSALSQ NMRGMRRRCL FNEKAGAVNK AAKKTSDRHS ANTTTPRCKT 360 NSGDKPVRTP PCALPGIGLH LNALAPISTD KIVPQAAQSS INQASNFPCA VSSSTSEPNI 420 VNEDSSQAIV VANADESGQG SPKKKRHKFD DGDGTSCKRC SCKKSKCLKL YCECFHAGVF 480 CSEPCSCQGC LNKPSNMEIV LSTREQIESR NPLAFAPKVI RTSEPGQELG PLLLSRRLGG 540 LSLEILLLAI SIYQLLMVLL SIEGLGPLSI EEAKQGNEEN SACVKEEKKE DDNNQLVICP 600 AANPVPAENV LTTPSAMDVR PLASRPPSSS KRPRSTTKVL GHPSRLCNSQ APLKTDTLLS 660 PFENYAEIMF GVGTSDSLKG GLSPQTSVKV VSPNKKRVSP PRIGTGLSPI CKSGRKLILK 720 SIPSFPSLGG DVNNADTKTT LPAP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354434 | 0.0 | AK354434.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007E24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189110.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | M8CFB3 | 0.0 | M8CFB3_AEGTA; Uncharacterized protein | ||||
STRING | EMT32903 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12746 | 26 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-30 | TESMIN/TSO1-like CXC 2 |