PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32884
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 373aa    MW: 41881.9 Da    PI: 7.0647
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32884genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002190112323
               ET..TTTEEESSHHHHHHHHHHT CS
   zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
               C+   Cgk+F +   L++H  +H
  EMT32884  90 CSydGCGKTFVDAGALRKHAHVH 112
               78889**************9887 PP
2zf-C2H216.52.4e-05117141123
               EEET..TTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
               y+C+   Cgk F ++s LkrH   H
  EMT32884 117 YVCHyeGCGKKFLDSSKLKRHFLIH 141
               9********************8877 PP
3zf-C2H221.75.2e-07147171123
               EEET..TTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
               ++Cp   Cgk Fs   nLk H++tH
  EMT32884 147 FVCPheGCGKAFSLDFNLKAHMKTH 171
               89**********************9 PP
4zf-C2H215.74.2e-05177202123
               EEET..TTTEEESSHHHHHHHHHH.T CS
   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
               + Cp   Cg++F++ s L+ H r  H
  EMT32884 177 HMCPypECGRRFTQESKLRAHFRAqH 202
               689999***************99877 PP
5zf-C2H211.90.00068246271123
               EEET..TTTEEESSHHHHHHHHHH.T CS
   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
               y+Cp   C k + + + L+ H+++ H
  EMT32884 246 YVCPydGCAKAYIHEYKLNLHLKKeH 271
               99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-1384114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001888112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.92888117IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-689113No hitNo description
PROSITE patternPS00028090112IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-14115137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.921117146IPR007087Zinc finger, C2H2
SMARTSM003550.0024117141IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280119141IPR007087Zinc finger, C2H2
SuperFamilySSF576677.67E-14128180No hitNo description
Gene3DG3DSA:3.30.160.601.4E-19138172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.3E-4147171IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.739147176IPR007087Zinc finger, C2H2
PROSITE patternPS000280149171IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-8177199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0077177202IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03177207IPR007087Zinc finger, C2H2
PROSITE patternPS000280179202IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-8238268IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.73E-5241269No hitNo description
PROSITE profilePS501578.871246276IPR007087Zinc finger, C2H2
SMARTSM003550.012246271IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280248271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MPLAVIGCML GWHIDWRSAF SDCMLPVVIN TANWRGIESK YFHYNYCGLL NSNGLPWLTE  60
DRLAALKSKD KEEGACTAKP DPATEVLFLC SYDGCGKTFV DAGALRKHAH VHGERQYVCH  120
YEGCGKKFLD SSKLKRHFLI HTGEKNFVCP HEGCGKAFSL DFNLKAHMKT HFADNYHMCP  180
YPECGRRFTQ ESKLRAHFRA QHEKTRQSGA QNPGGPVMNR NALGDHPHNT AKSLVTPPVP  240
SADRPYVCPY DGCAKAYIHE YKLNLHLKKE HPNHYSDAGA QAGPSRGTVS KNSRRSKPNL  300
TTSMPLAKIS KRSGYTVPSP AVSIPEEHQW PRKVLYEDDS EETEEEGDNL EEGGLRYRAA  360
SDGDDDEETE EEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C3e-33901988114PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3569600.0AK356960.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042P17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149431.10.0uncharacterized zinc finger protein At4g06634 isoform X1
SwissprotQ2V3L31e-89YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLM8CEP40.0M8CEP4_AEGTA; Putative zinc finger protein
STRINGEMT328840.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-91C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]