PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32772 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 411aa MW: 43879.8 Da PI: 7.7389 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.7 | 1.4e-50 | 11 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++ ++ + +++wy Fs++dkky+tg+r+nrat++g+Wkatg+dk+++s+ ++ EMT32772 11 VPPGFRFHPTEEELLTYYLAKKVASQRIDL-DVIRDVDLNKLEPWDIQErcRIGTgPQNDWYLFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSAaGS 110 69****************************.9***************953444442456**************************************9777 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +g++ktLvfykgrap+g+k+dW+mheyrl EMT32772 111 GRIGMRKTLVFYKGRAPHGHKSDWIMHEYRL 141 88***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-55 | 7 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.048 | 11 | 192 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-26 | 12 | 141 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.02E-55 | 180 | 192 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MSIPVNGQSV VPPGFRFHPT EEELLTYYLA KKVASQRIDL DVIRDVDLNK LEPWDIQERC 60 RIGTGPQNDW YLFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYSAAGS GRIGMRKTLV 120 FYKGRAPHGH KSDWIMHEYR LDDAATTGKN PANPAAGNAP YYSGGSSPMG GVAGHQSSAQ 180 EDGWVICRLF KKKNIAVQHQ AGQNAGSGAA ASNNLVGAGA MARSRSNCSS TVATASDHAK 240 ATQIQQHYSA SDDGALDHIL NQYMHGRSST TSCKQETTNP SSSALDHLIN SAGHNGGSTL 300 YEKFMKLPPL EHVVPGGLLP PPTEHSGDWD ALDQLVAYEL NGLSDAPSAK TTNGMPFIVD 360 ELSGATPFSG GGTLHVSSIT GASDGDLWSL ARSVSSLHAD LRINSFNAVG C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-46 | 11 | 194 | 15 | 170 | Stress-induced transcription factor NAC1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367801 | 0.0 | AK367801.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062J03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149596.1 | 0.0 | NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 8e-95 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | M8CYJ6 | 0.0 | M8CYJ6_AEGTA; NAC domain-containing protein 43 | ||||
STRING | EMT32772 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 2e-83 | NAC family protein |