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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
EMT32713 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
bZIP |
| Protein Properties |
Length: 318aa MW: 34575.9 Da PI: 6.6438 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT32713 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 29.3 | 1.8e-09 | 96 | 137 | 11 | 52 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52
NR A r++R++Kka ++ Lee+v+ L+a N++L k+l++
EMT32713 96 SGNRAAVRKYREKKKAHTALLEEEVAHLKAVNQQLVKKLQSH 137
44**********************************999864 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MDDGDIDFSN PETFLCEAMG NDPPASCSMG TYFDDILNGD TDHLACTHTH TCNPPVHDLA 60
HHTHTCVHVH TKILSASDDA AETSESLPES KKQRPSGNRA AVRKYREKKK AHTALLEEEV 120
AHLKAVNQQL VKKLQSHSAL EAEVARLRCL LVDIRGRIEG EIGTFPYQRT VKSNDFVDQG 180
SFLGGAQVMN SCGFRCNDQL YCNPGMQQAR TMDDDGVMSG QVLGQGAGDS MGCVKPDGSM 240
APPAEPPTVP TNLRAPLWSH VQIIEKSPGG GNTKWKCDYC GHEALSSYSR VSAHLLKKTG 300
NHGIHACKKA TVDILNPF
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK253086 | 0.0 | AK253086.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf120g05, mRNA sequence. |
| GenBank | AK353584 | 0.0 | AK353584.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001E08. |
| Publications
? help Back to Top |
- Azevedo H, et al.
Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
Genom Data, 2016. 7: p. 256-8
[PMID:26981422] - Castro PH, et al.
Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
Sci Rep, 2017. 7(1): p. 3806
[PMID:28630437] - Henriques AR,Farias DDR,Costa de Oliveira A
Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals.
Genet. Mol. Res., 2017.
[PMID:28671251] - Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
F-group bZIPs in barley-a role in Zn deficiency.
Plant Cell Environ., 2017. 40(11): p. 2754-2770
[PMID:28763829] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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