 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
EMT32685 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 319aa MW: 34697.1 Da PI: 7.1687 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT32685 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 54.1 | 2.6e-17 | 140 | 194 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Le F+++++++ e++ LA++l+L rqV vWFqNrRa+ k
EMT32685 140 RKKLRLSKEQSAFLEGSFKEHSTLTLEQKSCLANRLSLRPRQVEVWFQNRRARTK 194
678899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 117.2 | 9.1e-38 | 140 | 228 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
+kk+rlskeq+++LE sF+e+++L+ e+K+ la++L l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++dal++en++L++ev+eLr+
EMT32685 140 RKKLRLSKEQSAFLEGSFKEHSTLTLEQKSCLANRLSLRPRQVEVWFQNRRARTKLKQMEADCERLKRCCDALARENRKLQREVAELRA 228
69*************************************************************************************95 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MELELSLGDL PTPVKANTMP APATCQGEDH DDLALGLRVT ATERAGQENQ RTSIETAEGE 60
DSDEACPELP VRASPFRQAS AQTASANSRG FDVNAAVPVD GRASTARSLS PPSMHMEVPV 120
TQGVDEEASE DEDNGGARVR KKLRLSKEQS AFLEGSFKEH STLTLEQKSC LANRLSLRPR 180
QVEVWFQNRR ARTKLKQMEA DCERLKRCCD ALARENRKLQ REVAELRASR APYPLYNLNH 240
HLPGFGAALP SCSSCDATTR STVSTVSSPG PSPMSTLFPG RPHFGPFTVT HPSVILAIVG 300
RSLISICVPV TVRHMPFPG
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 137 | 143 | RVRKKLR |
| 2 | 188 | 196 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK249428 | 0.0 | AK249428.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf26g21, mRNA sequence. |
