PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MIKC_MADS

Protein Properties

Length: 129aa MW: 14697.1 Da PI: 10.1851

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT32612	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79	3.3e-25	10	57	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien s+r vtfskRr+g+lKKA EL +LCd+ev vi+fs tg+lyey+ EMT32612 10 RIENMSRRPVTFSKRRHGLLKKARELAILCDVEVGVIVFS-TGHLYEYA 57 8************************************8.7****8 PP
2	K-box	32.3	4.3e-12	74	128	12	70
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 ++++s q++++ L+ + ++ + +Ge L++L + ++ +e+qLeksl +iR+kK+ EMT32612 74 QNYQSAQEQHQLLNPVSQVMEAN----MGERLSNLAVTNICLMENQLEKSLHRIREKKE 128 78999***************9....****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.048	1	60	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.2E-31	1	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.09E-23	3	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-23	10	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-19	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	4.1E-6	95	128	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MVRGKIVIRR IENMSRRPVT FSKRRHGLLK KARELAILCD VEVGVIVFST GHLYEYANST 60 AATSMGTTMP SIIQNYQSAQ EQHQLLNPVS QVMEANMGER LSNLAVTNIC LMENQLEKSL 120 HRIREKKEI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153605.1	1e-89	MADS-box transcription factor 25-like
Swissprot	Q84NC5	4e-35	MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBL	M8CY23	4e-90	M8CY23_AEGTA; MADS-box transcription factor 25
STRING	EMT32612	6e-91	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	3e-35	AGAMOUS-like 21

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Puig J, et al. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70 [PMID:23466806] Yu C, et al. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS ONE, 2014. 9(8): p. e105597 [PMID:25140876]