PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32486
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 117aa    MW: 12865.4 Da    PI: 9.7497
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32486genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-081357344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W++ E +l+ da + +G g   +W +++r m  ++t+ +++ ++
         EMT32486 13 EWSKKENKLFEDALAYYGEGtpdRWLKVSRAMSGTKTADEVRRHY 57
                     5********************************9**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.795661IPR017877Myb-like domain
SMARTSM007175.5E-61063IPR001005SANT/Myb domain
CDDcd001673.41E-61357No hitNo description
Gene3DG3DSA:1.10.10.608.5E-41360IPR009057Homeodomain-like
PfamPF002494.5E-61357IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-111362IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MSSGSRSSSR GAEWSKKENK LFEDALAYYG EGTPDRWLKV SRAMSGTKTA DEVRRHYEIL  60
DSDITPAGFL SPSTTPRAGG LGTDSSIKPS SKFEKLRYVN LQGAKLLNFE DPAKSFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-14764260RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3739373e-81AK373937.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3048G15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM8D7N42e-79M8D7N4_AEGTA; Uncharacterized protein
STRINGEMT324863e-80(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36570.13e-16RAD-like 3