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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32188 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C3H | ||||||||
Protein Properties | Length: 151aa MW: 16280.2 Da PI: 10.1639 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.1 | 2.7e-07 | 110 | 130 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+ff++ G C yG++C++ H EMT32188 110 RPCKFFLA-GDCTYGEKCRYPH 130 79******.**********965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.84 | 28 | 54 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.054 | 28 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.342 | 106 | 133 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 107 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0023 | 108 | 132 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-4 | 110 | 130 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 110 | 130 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MDFEADGRFG NKRVHNRLGP APGAASSSSS TKVCIHWRAG RCNRFPCPFL HSELPEAATT 60 KRPNQRDGPG GHVWRNPNSG GGGRGGGGFN KWGRGPGGTD GGVRHKVPDR PCKFFLAGDC 120 TYGEKCRYPH TYCMSNSITL LTPLQGHEKA S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 87 | GGRGGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359452 | 0.0 | AK359452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1097E17. | |||
GenBank | AK362733 | 0.0 | AK362733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162465.1 | 1e-107 | zinc finger CCCH domain-containing protein 17 | ||||
Swissprot | Q0DYP5 | 6e-67 | C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17 | ||||
TrEMBL | A0A453P9X1 | 1e-106 | A0A453P9X1_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453PA35 | 1e-106 | A0A453PA35_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453PA40 | 1e-106 | A0A453PA40_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8CDG2 | 1e-107 | M8CDG2_AEGTA; Uncharacterized protein | ||||
STRING | EMT32188 | 1e-108 | (Aegilops tauschii) | ||||
STRING | Traes_6DL_F4FBB448F.2 | 1e-106 | (Triticum aestivum) | ||||
STRING | TRIUR3_29037-P1 | 1e-103 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2026 | 34 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 7e-24 | zinc finger WD40 repeat protein 1 |
Publications ? help Back to Top | |||
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