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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 110aa MW: 11947.5 Da PI: 10.2226 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F L H+r+H EMT32000 68 HQCHVCGLEFEMGQALGGHMRRH 90 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 5.9E-8 | 16 | 40 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.49E-6 | 16 | 90 | No hit | No description |
SMART | SM00355 | 28 | 16 | 38 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 18 | 38 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.0E-11 | 67 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.24 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.681 | 68 | 95 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MADRSKKQRR GADGEFVCKT CSRAFPSFQA PGGHRTSHLR ARHGLALGLT GGSDQPATNK 60 ATDQKQAHQC HVCGLEFEMG QALGGHMRRH REQEAATTAQ APPVLLQLFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU253554 | 1e-180 | EU253554.1 Triticum aestivum C2H2 zinc finger protein (ZFP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198422.1 | 2e-74 | zinc finger protein ZAT8-like | ||||
Refseq | XP_020199617.1 | 2e-74 | zinc finger protein ZAT8-like | ||||
Swissprot | Q9LX85 | 7e-20 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | M8C3W9 | 2e-74 | M8C3W9_AEGTA; Zinc finger protein 1 | ||||
STRING | EMT32000 | 3e-75 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 3e-22 | C2H2 family protein |