PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT31997 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 133aa MW: 14319.4 Da PI: 10.4776 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+sF++ L H +H EMT31997 42 FVCKTCGRSFPSFQALGGHRTSH 64 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 17.5 | 1.1e-05 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F + L H+r+H EMT31997 95 HRCHICGQGFETGQALGGHMRRH 117 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.5E-8 | 41 | 117 | No hit | No description |
PROSITE profile | PS50157 | 10.408 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.4E-11 | 42 | 66 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.086 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-10 | 95 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.018 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.616 | 95 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MTKHQRAAAD QAVSLSLSLS LGVVADINKK MRRATAASGD QFVCKTCGRS FPSFQALGGH 60 RTSHLRGRHG LTLALTAGGQ CYSVKPKSTD QKPEHRCHIC GQGFETGQAL GGHMRRHRDE 120 AAQAPPVLLE LFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250895 | 4e-99 | AK250895.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100e15, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198426.1 | 6e-94 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A453M9G6 | 1e-92 | A0A453M9G6_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8CWD7 | 1e-92 | M8CWD7_AEGTA; Zinc finger protein 1 | ||||
STRING | EMT31997 | 2e-93 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 4e-21 | C2H2 family protein |