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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT31778 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | WRKY | ||||||||
Protein Properties | Length: 265aa MW: 28350.1 Da PI: 6.6439 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102 | 3.5e-32 | 153 | 211 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s fprsYYrCt ++C vkk vers++dp++v++tYeg+H h+ EMT31778 153 LDDGYRWRKYGQKAVKNSSFPRSYYRCTATRCGVKKLVERSQQDPSTVVTTYEGRHGHP 211 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.7E-32 | 140 | 213 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-28 | 146 | 213 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.297 | 148 | 213 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.6E-36 | 153 | 212 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-25 | 154 | 211 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MSGSASGEGN HDGGQLYGED DTVFFQSPAC GGGDDVGATP SAYSTITDYL HGLLDPAELA 60 RHLDAPPCFP TASEVIGAEA APFTSNSSTS GEAADEPRGC KRGTPAPEED EDGSADHGSC 120 RSNEKEKKKK GKGEKKAHGS RVAFATKSEV DHLDDGYRWR KYGQKAVKNS SFPRSYYRCT 180 ATRCGVKKLV ERSQQDPSTV VTTYEGRHGH PSPVATHRGP RMLMATAGAD VYAPLVAHRL 240 SEHGGMQFHA DLLPDAVMGY QQGYR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 146 | 213 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 146 | 213 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367216 | 0.0 | AK367216.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2052P23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180608.1 | 0.0 | probable WRKY transcription factor 71 isoform X2 | ||||
TrEMBL | M8CCC5 | 0.0 | M8CCC5_AEGTA; Putative WRKY transcription factor 23 | ||||
STRING | EMT31778 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 6e-39 | WRKY DNA-binding protein 71 |