PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT31777

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

WRKY

Protein Properties

Length: 303aa MW: 32427.7 Da PI: 6.7562

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT31777	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.1	3.2e-32	160	218	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s fprsYYrCt a+C vkk vers++dp++v++tYeg+H h+ EMT31777 160 LDDGYRWRKYGQKAVKNSSFPRSYYRCTAARCGVKKLVERSQQDPSTVVTTYEGRHGHP 218 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-32	147	220	IPR003657	WRKY domain
SuperFamily	SSF118290	4.84E-28	153	220	IPR003657	WRKY domain
PROSITE profile	PS50811	30.458	155	220	IPR003657	WRKY domain
SMART	SM00774	7.0E-36	160	219	IPR003657	WRKY domain
Pfam	PF03106	2.7E-25	161	218	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MSGSAAAGGG DLGGGQFYGD HPPADDVFFQ SRSACGGEDD GGVTPSAYSS ITDYLQGLLD 60 PAELARHLDA PPCPPTMRAV IGEAAAPVTP NSSTSGEAAG VESHGCKRGS PVPEEGDEDG 120 SADHHNHRSD EKEQKKKGKW EKKARGSRVA FATKSEVDHL DDGYRWRKYG QKAVKNSSFP 180 RSYYRCTAAR CGVKKLVERS QQDPSTVVTT YEGRHGHPSP VAAHHGARML MATGADTSYS 240 LAALQHHQHD FLPAGADVYG RMCMQPTTAV TPSVAHRLSE YGGMQFHADL LPDDAMGYQH 300 GYR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-26	153	220	10	77	Probable WRKY transcription factor 4
2lex_A	4e-26	153	220	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR827397	0.0	KR827397.1 Triticum aestivum WRKY46 transcriptional factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020180590.1	0.0	probable WRKY transcription factor 71 isoform X2
TrEMBL	M8CVX0	0.0	M8CVX0_AEGTA; Putative WRKY transcription factor 23
STRING	EMT31777	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	3e-40	WRKY DNA-binding protein 71