PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31520
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 487aa    MW: 55290.3 Da    PI: 8.8321
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31520genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.31.8e-101422043398
               -SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3  33 sktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
               ++t  + ++ g + W vk+  ++  ++ +l++GW +Fv a+g+ +g  +v++++   ++ l++k+f+
  EMT31520 142 GQTALVLSPFGkNAWPVKV--DRDAKGAFLGDGWPQFVAAHGIGVGWYLVIRHE--GCGVLTLKAFN 204
               33455555555499*****..*******************************65..57778888876 PP
2B345.81.1e-144204763286
               --SEEEEEE.TTS-EEEEEE....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
        B3  32 esktltled.esgrsWevkliy..rkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 
               +  ++tl++ e+++sWev+       + +r    lt+GWk F+k+n+Lk+gD+++Fk+++
  EMT31520 420 C--KITLKSvERNKSWEVEGVNyhP-GTRRsyNCLTRGWKAFCKENELKAGDICTFKVVN 476
               3..7999998999******944452.33334689***********************654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.015133206IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-9142205IPR015300DNA-binding pseudobarrel domain
PfamPF023624.1E-8142205IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-9144206IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.67156206IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-5230325IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-6231324IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.034275327IPR003340B3 DNA binding domain
SMARTSM010190.0017395487IPR003340B3 DNA binding domain
CDDcd100175.98E-12408473No hitNo description
SuperFamilySSF1019362.94E-13409486IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-14410486IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-12419485IPR003340B3 DNA binding domain
PROSITE profilePS5086311.505421487IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MRVDQTLLRK RETKEKIPKI KASGSVKRTQ PASIHSLCIV LLWNRYSVHW TRRWWNFFLG  60
SVKAMGLSSN CAKTIKVQQC VKLPDSKYLH INDELAGCFG TEDHGDGQTA LVLSPFGKNA  120
WPVKHINDEL AGCFGTEDHG DGQTALVLSP FGKNAWPVKV DRDAKGAFLG DGWPQFVAAH  180
GIGVGWYLVI RHEGCGVLTL KAFNASFVIK EFGLTITVLS PAEIENAFAR KPQFIVPLQR  240
SFMEKMPIPP EFLQRGYISE EDLNRPRPIA TFLTSWHIEL KKDGPNVFFT GSEWPKFLAY  300
FEIAETDVLL IKYQGCMNFS FETFQNGNNE DIEEKISSSQ QSEQSPGAQS QEEEHVCTRK  360
RKQSEVKSML DGSTTSQHRK KALCELGSTG SQAWLRKEIN ELALKRYLHF PARFGFLERC  420
KITLKSVERN KSWEVEGVNY HPGTRRSYNC LTRGWKAFCK ENELKAGDIC TFKVVNSTLW  480
HVVIDRC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357362TRKRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181882.10.0putative B3 domain-containing protein Os04g0346900 isoform X5
TrEMBLM8C2K60.0M8C2K6_AEGTA; Putative B3 domain-containing protein
STRINGEMT315200.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.11e-06B3 family protein