 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
EMT31299 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
SBP |
| Protein Properties |
Length: 469aa MW: 50942.8 Da PI: 9.5306 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT31299 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 132.7 | 1.2e-41 | 181 | 257 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
CqvegC++dls++k+yhr+h+vCe hskap+v+v+gle+rfCqqCsrfh+l efD++krsCrrrL++hn+rrrk+q+
EMT31299 181 CQVEGCKVDLSSVKDYHRKHRVCELHSKAPKVVVAGLERRFCQQCSRFHALAEFDQKKRSCRRRLNDHNSRRRKPQP 257
**************************************************************************997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048653 | Biological Process | anther development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 469 aa
Download sequence Send
to blast |
MEWNQRSSVL WDWENFPPIG ENPKNAMQAD PRFAAVAANQ RSEPPLHSSG GSGTFSSSSE 60
MGYGSSKSSM SASIDSSNRA GNNMEFRFAP VKNPDRNTSK NTELGKVDNT RTGTSPSPVV 120
AVSSGEPVIG LKLGKRTYFE DVCGGQNVKS SPSGAASAPN KSPALGKKAK AEQQKPHNSY 180
CQVEGCKVDL SSVKDYHRKH RVCELHSKAP KVVVAGLERR FCQQCSRFHA LAEFDQKKRS 240
CRRRLNDHNS RRRKPQPEAI SFSSSRMSTM FYDARQQPNF LFGQAPYVQM RSCGSSSWDD 300
PGGFKVTHTK APWLKPTTAA GVHGIHLSSQ QMSDNIMPHG AHHGFDGFMA FKGTCTKFPN 360
QGVQASAVAS DSSGAPDLQH ALSLLSSNPV GAANLQPSPQ MHSGVAAIAG APNPAMHALG 420
SSTGLWLDGS QPLDDHPRFQ VFERLGDHDS ELQLPKPSYD HASHFDRMH
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 236 | 253 | KKRSCRRRLNDHNSRRRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF447885 | 0.0 | KF447885.1 Triticum aestivum squamosa promoter-binding-like protein 3 (SPL3) mRNA, complete cds. |
