PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT30818
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 299aa    MW: 33006.7 Da    PI: 6.3737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT30818genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72e-0875118455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +h+ +Er RR+ri +++  L++l+P +        +Ka +L + ++Y++sLq
  EMT30818  75 SHSLAERVRRERISQRMKFLQDLVPGC--------NKALMLDEIINYVQSLQ 118
               8**************************........9***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.93E-1069122No hitNo description
PROSITE profilePS5088811.17971127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1471130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-1571132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-575118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-977123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MYEANVGEQK ESDGKRCRTG NAEKKVKPKA EQAGSDSSVE DGEQRKGGKG KNAKPVEPPK  60
DYVHVRARRG QATDSHSLAE RVRRERISQR MKFLQDLVPG CNKALMLDEI INYVQSLQRQ  120
VEFLSMKLAT VNPLDFSNLP TLLHKDMYGP SASSVFSLES SSSAFPFSDQ GDVFQSFLPN  180
SMESQCTLNQ LDLALSQATN AAQYAFQDGT ATASTNLQQQ RNFWEDDLQS VFHVDNRQSQ  240
DNGVSAESFH GRSDENGVLA GVAEGKKRID SLYIGRIKKT EAVAREAMAL SSEANSLCN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675800.0AK367580.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146737.11e-171transcription factor bHLH78-like isoform X1
SwissprotQ9FJL48e-50BH078_ARATH; Transcription factor bHLH78
TrEMBLM8C9P30.0M8C9P3_AEGTA; Transcription factor bHLH78
STRINGEMT308180.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.28e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]