PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT30797 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | bHLH | ||||||||
Protein Properties | Length: 887aa MW: 95896.7 Da PI: 6.2113 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.1 | 0.00074 | 691 | 729 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P+ a k s + Lek+v+++ Lq EMT30797 691 RQLIQDRIKELREMVPNgA-----KQCSIDALLEKTVKHMLFLQ 729 67799************66.....66888899******999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 6.1E-26 | 6 | 160 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 0.00323 | 672 | 729 | No hit | No description |
PROSITE profile | PS50888 | 10.588 | 678 | 728 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.7E-5 | 691 | 741 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.54E-5 | 691 | 734 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 887 aa Download sequence Send to blast |
MAVGDALRRL GEDIGCSYAV FWKASGAAAP VHLVWEDGYC GHTPCPAGSE ASQARATELG 60 CSAAVDSICS LVRKDMAQQV HVVGEGTIGR VAFTGSHQWI IHGTADDHGL SSEVASEMHY 120 QFIAGIKTIA IIPVLPRGVL QLGSTGVVME NTSFVMHAKK LCSQLNQRSS MAASASVKST 180 SNQSRPLHGA SNIQAADNSF SQFPVIREQY RQSDSATASS SKSLNASLFE AAQQNGLTGR 240 EHIVYGKPND MFVQQASYCD SRLGSNTQSA AIGSDLVPSS LASVEQQQML MNTIGQLEFG 300 SGTDLARSAL LKSLLYRNPF MHETSDMKLS HGRVGLSQGT TGHGSYGFLP GSAGVVSTTL 360 CTSSQVSEQG SHSSSGMLRQ KQPPVSCNVP QSSEFTMKMV RQERRSSEGA LPVSSQSDVQ 420 VSNCLNGMSQ ENLLSRSGHM QKDQNTDRAN DPRVAVSTQG VKNMDGCMLP AMPSETAHSL 480 LLQPTWDNDL FDIFGSEFHQ LGHNVDANLV SSCDAKSHSL DRDATEPSIC LDSSSLFSSL 540 DNDFPCSGIF SLTDTDQLLD AVISNVNPSS KQSSDDNASC KTALTDIPNI SHFGLEELKQ 600 CDSSGIPSTV IKNESTQIVK QPYYFDKTED GCLSQNNGAQ KSQIRLWIEN GQNMKCESAS 660 ASNSKGLDTQ SKSNRKRSRP GESSKARPKD RQLIQDRIKE LREMVPNGAK QCSIDALLEK 720 TVKHMLFLQS VTKHADKLKD STESKILGSE NGPVWKDYFE GGATWAFDVG SQSMTCPIIV 780 EDLDRPRQML VEMICEDRGI FLEIADFIKG LGLTILRGVM EARKSKIWAR FTVEANRDVT 840 RMEIFLSLVR LLEPNCDGSG AAENPNSVNM PLGLVRQPVI PATGGIQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369500 | 0.0 | AK369500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092I05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178282.1 | 0.0 | transcription factor LHW-like isoform X1 | ||||
TrEMBL | M8CT97 | 0.0 | M8CT97_AEGTA; Putative basic helix-loop-helix protein | ||||
STRING | EMT30797 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2654 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 3e-51 | conserved peptide upstream open reading frame 7 |