PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT30739 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | B3 | ||||||||
Protein Properties | Length: 425aa MW: 48662.6 Da PI: 9.2713 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.8 | 7.2e-17 | 107 | 191 | 7 | 97 |
.-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 p d ++++ +++p +f+ ++ g k s t+ le ++g++++v++ + ++++++l++GW+ Fv+an + e D+++F++ g+ +f +v vf EMT30739 107 PMDRNSRHSMIIPESFV-NYfGWK--LSGTIELEAPNGNVYDVRV--TERRNKTFLRSGWEAFVDANYIVETDSLMFRYRGNCRF--NVLVF 191 6688999**********.552544..667****************..999999**************************999999..77766 PP | |||||||
2 | B3 | 38.8 | 1.6e-12 | 335 | 422 | 10 | 99 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfrk 99 + +++ l++ k+++++ k +s+ l+++ e ++W l ++++ +++GW +F+++n+L+egD+++F+l+++ ++++v ++r+ EMT30739 335 NVRRS-LTFATKYCDTYLRK--GSRSLVFQAEGKiQQWHGGL--HVTDRALRIRGGWTSFARDNNLREGDICLFELMKNkvGLKKMMVYIIRR 422 44444.88888888888444..5668999997777*******..999999*************************996645666788888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-21 | 98 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-20 | 100 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.183 | 101 | 194 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.84E-17 | 102 | 191 | No hit | No description |
SMART | SM01019 | 1.7E-11 | 104 | 194 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-15 | 107 | 191 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.9E-16 | 321 | 425 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-17 | 321 | 423 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.025 | 325 | 423 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.35E-11 | 325 | 421 | No hit | No description |
SMART | SM01019 | 0.0011 | 327 | 423 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.9E-10 | 338 | 422 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MTLELYVADV VDDHKMKMNA MRLKMDAMRL KKIRKYAIDN EAWYHYAVGS IATLVAIFIS 60 FVVMRDEQCE TCYLYMTLVG GEMRKSCVCC KRYWTHLHGK VKCFVAPMDR NSRHSMIIPE 120 SFVNYFGWKL SGTIELEAPN GNVYDVRVTE RRNKTFLRSG WEAFVDANYI VETDSLMFRY 180 RGNCRFNVLV FHSSGCEKVV SCARMLTNIS DQEPSTNSRD ISTSFSDGNT HSSARGRSDD 240 CQSGSSGHRR KRPKKDAISS PSEDSSGEDS PYEHESSKSE DTKRIGITPE HDDTDPYMMS 300 LGARLTQGQK KKVLEKVGAI ASDLHIYVAV MNKTNVRRSL TFATKYCDTY LRKGSRSLVF 360 QAEGKIQQWH GGLHVTDRAL RIRGGWTSFA RDNNLREGDI CLFELMKNKV GLKKMMVYII 420 RRERC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 248 | 255 | RRKRPKKD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 9e-78 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158256.1 | 0.0 | B3 domain-containing protein Os03g0619600-like | ||||
TrEMBL | M8C8Y5 | 0.0 | M8C8Y5_AEGTA; B3 domain-containing protein | ||||
STRING | EMT30739 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 5e-19 | B3 family protein |