PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT30632 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C3H | ||||||||
Protein Properties | Length: 130aa MW: 14443.3 Da PI: 8.8105 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 50.4 | 3.6e-16 | 56 | 81 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yGd+C+FaHg EMT30632 56 FKTELCNKWEETGACPYGDQCQFAHG 81 79***********************9 PP | |||||||
2 | zf-CCCH | 20.2 | 1e-06 | 94 | 119 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr + + C+yG rC+F H+ EMT30632 94 YKTEVCRMVLNGEVCPYGHRCHFRHS 119 9******999966**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 9.8E-20 | 50 | 88 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-11 | 52 | 87 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-10 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.77 | 55 | 83 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-13 | 56 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-13 | 89 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-9 | 90 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.807 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MNQATPAAAT PAAYTRKPSS QRAYAGPGAD GGKKGEEQKT KQDAAGELDV YNQGMFKTEL 60 CNKWEETGAC PYGDQCQFAH GVSELRPVIR HPRYKTEVCR MVLNGEVCPY GHRCHFRHSL 120 TAAERLLRSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 4e-23 | 56 | 119 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-163 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154780.1 | 2e-93 | zinc finger CCCH domain-containing protein 9-like isoform X1 | ||||
Swissprot | A2ZVY5 | 6e-62 | C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9 | ||||
TrEMBL | A0A3B6GW71 | 4e-92 | A0A3B6GW71_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453F4I6 | 2e-93 | A0A453F4I6_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8CSQ4 | 2e-93 | M8CSQ4_AEGTA; Zinc finger CCCH domain-containing protein 9 | ||||
STRING | EMT30632 | 3e-94 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2775 | 37 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 5e-48 | C3H family protein |