PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT29974
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 272aa    MW: 28989 Da    PI: 6.3654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT29974genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.15e-1192153454
               HHHHHHHHHHHHHHHHHHHHHCTSCC.C.............TTS-STCHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPk.as..........kapskKlsKaeiLekAveYIksL 54 
               ++  rE+ RRd++N++f eL +++ +              +++ Kl+Ka+iL  A++ + +L
  EMT29974  92 SKACREKMRRDKLNDRFLELCSVMNSgKHtgveecsasnPGKNAKLDKASILSDATRMLTQL 153
               6789**********************666****************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.36388153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1189169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-691158No hitNo description
PfamPF000101.9E-892153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1193175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-794159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MMDGGGGVGD PVEEFLIGGA GDGGEDALAA FCDGGALLLL AMGNCALNAM QPSRALLAQL  60
GIEDVSGGDS GLGHSNFGKR GRDEPSPSGP KSKACREKMR RDKLNDRFLE LCSVMNSGKH  120
TGVEECSASN PGKNAKLDKA SILSDATRML TQLRGETEKL KESNVNLRET IKDLKVEKNE  180
LRDEKLSLKA EKERLEQQLK AASAAPTGFA PHMPYPAAFH PAVFPPFAPP YQVPANKGAP  240
VPAAFPGMAM WHWLPPTAMD TTQDPKLWPP NA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691720.0AK369172.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2086D01.
GenBankAK3702300.0AK370230.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2107F07.
GenBankAK3735130.0AK373513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3033I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158150.11e-162transcription factor ILR3-like
TrEMBLM8C6T50.0M8C6T5_AEGTA; Transcription factor ILR3
STRINGEMT299740.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.14e-49bHLH family protein