PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT29916
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 347aa    MW: 37495.5 Da    PI: 4.5138
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT29916genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.21.2e-141966249
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              rie k  r++++skRr g + KA+ L vL++a+va + fs+ g+++ +
  EMT29916 19 RIEQKDARHISYSKRRRGFFTKASDLAVLTGAQVAALAFSPGGNVFSF 66
              8*******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.751070IPR002100Transcription factor, MADS-box
SMARTSM004327.4E-201069IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-201182IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-111232IPR002100Transcription factor, MADS-box
PfamPF003191.0E-161966IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-113247IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-114768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAPPNRRGGS GRKKTVIRRI EQKDARHISY SKRRRGFFTK ASDLAVLTGA QVAALAFSPG  60
GNVFSFGHPS IDSVVERFLP AEGAGVGARE ESTADDRLLA GESAGEGAAE GAADEDKKLQ  120
KLHEEFDELR TELVDVKKRA KRNEEAMAKE RAAGDQIAAW FDPKARDMGD GDMAAFFAAL  180
MQVKDVVSDR ANQVLLEAFQ FDVSRMAEVA PPPPPQIFGG SMFEFGSSSG SANDGTDFQF  240
LVPPPQEQGL QAGMDMQQMV MPLPPGLAGG LDMEQQMQMT IPPPPGLAAG MDMEQVQMTM  300
PKPPGFDAGI EMEIDQWLNV MLPPPEFPAG METVQQGLHQ PNAGFPY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-148HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172977.10.0agamous-like MADS-box protein AGL61
TrEMBLM8D1350.0M8D135_AEGTA; Agamous-like MADS-box protein AGL62
STRINGEMT299160.0(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-21M-type_MADS family protein