![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT29513 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 264aa MW: 29072.3 Da PI: 10.1133 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.4 | 7.8e-30 | 80 | 137 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ +Hnh+ EMT29513 80 DSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYSYDHNHP 137 99************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.9E-31 | 70 | 139 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.45E-26 | 76 | 139 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-35 | 78 | 138 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-25 | 80 | 137 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.433 | 80 | 139 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 264 aa Download sequence Send to blast |
MSDCSTGTDS PRADSVDEQP PADAESPGGG QSKRDQPSPS SPLPPPKRSR RSVEKRVVSV 60 PIAECGERAK TNGEGPPPPD SWAWRKYGQK PIKGSPYPRG YYRCSSSKGC PARKQVERSR 120 ADPTVLLVTY SYDHNHPWPA PKTGCHPNKS SPRLVDPKPE PGTPVECQPE QGPEAPEQEQ 180 EEEHEPWRRR RRTGSASCRG RTRSSRGWAS SRSAPSCSAA GASSPWRPPR PAPDRRASLP 240 FRSRFPPFFS FPPAVVFTRS NLEV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-19 | 55 | 140 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 1e-19 | 55 | 140 | 6 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 187 | 192 | RRRRRT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF397614 | 0.0 | EF397614.1 Triticum aestivum cultivar Nongda 3338 WRKY13 transcription factor (WRKY13) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185102.1 | 1e-127 | probable WRKY transcription factor 65 | ||||
TrEMBL | M8C626 | 0.0 | M8C626_AEGTA; Putative WRKY transcription factor 65 | ||||
STRING | EMT29513 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7088 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G29280.1 | 3e-38 | WRKY DNA-binding protein 65 |