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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT29213 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 23789.6 Da PI: 4.3235 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.4 | 1.3e-16 | 29 | 77 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr ++ +g Wv+eIr p g+++r++lg++ tae Aa+a++aa ++l+g EMT29213 29 YKGVRMRS-WGAWVSEIRAP---GQKTRIWLGSHSTAEAAARAYDAALLCLKG 77 9****998.**********8...557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-26 | 28 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-17 | 28 | 88 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-28 | 28 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.85 | 28 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.7E-10 | 29 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-8 | 29 | 40 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.77E-15 | 29 | 88 | No hit | No description |
PRINTS | PR00367 | 4.0E-8 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVKTAAAGSN GDGAVAAKQQ QLGGKMRTYK GVRMRSWGAW VSEIRAPGQK TRIWLGSHST 60 AEAAARAYDA ALLCLKGASA AADLNFPVRF PFDLPAAAMS PKSIQRVAAA AAAAGASANV 120 FDFAGADDSA SANAVDFAGA VTPEYCSSSS NASPTPSSGA ADLDGVDLLG YGYSQCSLAE 180 IEAFFQSPKC MEYAMMDPSS AFFAPAPMAM EDECSWEEGG DIALWSFSMD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-11 | 22 | 90 | 8 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370870 | 1e-156 | AK370870.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2118P17. | |||
GenBank | AK376100 | 1e-156 | AK376100.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3114M17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156807.1 | 1e-140 | ethylene-responsive transcription factor ERF014-like | ||||
TrEMBL | M8C580 | 1e-164 | M8C580_AEGTA; Ethylene-responsive transcription factor ERF012 | ||||
STRING | EMT29213 | 1e-165 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3197 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77640.1 | 2e-25 | ERF family protein |