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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT29170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ARR-B | ||||||||
Protein Properties | Length: 717aa MW: 79561.2 Da PI: 6.7526 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 79.4 | 4.3e-25 | 194 | 248 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr+ Wt LH++F+ea++q+ G ++A+Pk++lelm+v+ L++e+++SHLQkYRl+ EMT29170 194 KPRMTWTIALHNKFLEAINQI-GLDRAVPKKVLELMNVDYLSRENIASHLQKYRLH 248 79*******************.********************************97 PP | |||||||
2 | Response_reg | 74.3 | 4.7e-25 | 23 | 131 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+++ +++l+ +l+ +y + +++ dg+ al++l ++++Dl+++D++mp+mdG++ll+ i e +lp+i+++ +++ + + ++ Ga+ EMT29170 23 VLVVDDDRVCLMVLEALLRCCKY-QPTTVMDGKTALRMLmaGKQQFDLVITDVRMPDMDGFKLLELICLEM-DLPVIMLSVDCDKKVVMKGIDHGAS 117 89*****************9999.8899**********9555555**********************8865.9************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 df +Kp+ el + EMT29170 118 DFMVKPVRTHELKN 131 *******9999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 3.42E-33 | 19 | 141 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.5E-37 | 20 | 157 | No hit | No description |
SMART | SM00448 | 8.0E-28 | 21 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 40.28 | 22 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.5E-22 | 23 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.41E-25 | 24 | 136 | No hit | No description |
SuperFamily | SSF46689 | 6.81E-18 | 192 | 251 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.6E-26 | 193 | 252 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-23 | 194 | 248 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 717 aa Download sequence Send to blast |
MGGDRRQMME DAAEDKFPEG LRVLVVDDDR VCLMVLEALL RCCKYQPTTV MDGKTALRML 60 MAGKQQFDLV ITDVRMPDMD GFKLLELICL EMDLPVIMLS VDCDKKVVMK GIDHGASDFM 120 VKPVRTHELK NIWQHVQRWR NPKAISHIND HDNDVQRVQP ATTDKSKYSG NKRNDGDDSS 180 ENNEGTHISA IHRKPRMTWT IALHNKFLEA INQIGLDRAV PKKVLELMNV DYLSRENIAS 240 HLQKYRLHLK RVKSNPSGDA YERWTSSYNM NNKGNFMHNH EHGRWSVSCG DTASWITNKY 300 GSTGHLAPPV NIQSNFYMGS YLHDGRMPKY VGKLPSDARR FTGFVDPPVS LYDNIPNEIM 360 SDEFPSFNHS NSCADIMRGK IMEISKGKTP SNLQSSFANT TVGGGRSLVA SQVNFPHSNQ 420 LESFAMSSGR LPLQNEKAPF ISNTTSVGGY IEQMAPFNMA SNISSVGTML NGSSALDASR 480 TSTNDTHLVN GERTTSMLHN LQTDDFVSLT QLHDGGDGAS IVPMQEGTLN QQPLNDHLNE 540 INAFSMDDIL SNMHMEGLPH LPILSLGSSI DERGNVFRLS PKKPRIVPKG GPHTVTNGDG 600 GGSIENVEVL LIAWVSYSHP HLGGNLPFIS WPSQPESPRK LVFVLKWLAN ILPIDLAFVP 660 RCLVRTGPKE SSIELVDIVK DGWSDDQRGG GVDHLGCDHG LDKSRTSNGG DVLAIIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-22 | 192 | 252 | 3 | 63 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166370.1 | 0.0 | two-component response regulator ORR24-like | ||||
Refseq | XP_020201549.1 | 0.0 | two-component response regulator ORR24-like | ||||
TrEMBL | M8BVY0 | 0.0 | M8BVY0_AEGTA; Two-component response regulator ARR12 | ||||
STRING | EMT29170 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15285 | 4 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 9e-65 | response regulator 12 |