 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
EMT28857 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
Family |
NF-YC |
Protein Properties |
Length: 408aa MW: 44514.1 Da PI: 10.0459 |
Description |
NF-YC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
EMT28857 | genome | BGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NF-YC | 42.9 | 1.1e-13 | 125 | 186 | 16 | 77 |
NF-YC 16 fknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkks 77
f + + +arikki++adedv +i+ +Pvl+s+a elf+ +l rs+ + ++ +tl+
EMT28857 125 FLKMQTRVARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRSYKITLQSGAKTLNSF 186
56677889*********************************************999999865 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 408 aa
Download sequence Send
to blast |
MAEVRCPTGC SITRERPNAR SLSKKSSWAN VTAGRINAEL SGSDAGITTR RRKSEEREVA 60 GRGGGYGVVG GRSGNGSSAD HGEESEIGGE LRGVGCRAKG AGHGDVMAGG RAEAAFRLRA 120 GRKRFLKMQT RVARIKKIMQ ADEDVGKIAL AVPVLVSRAL ELFLQDLIDR SYKITLQSGA 180 KTLNSFHLLQ RGTRIWKADE YKKNIGKLLP RLKMYQQMLR KQCVKRYSSF DFLTEIVNKV 240 PDLGGGESCG DERGLPRRRK FSNGSDPENE EPRSSKMPIR SLNTSPRGRG RGRGRGRGRP 300 PTKRKEIGYV QFEDESSMFA EQSEPLPGDE IVPETNRGNE SIPQSSHPLV EAPSAATPAV 360 ISKVEKASTN HQPDLPMPDA IGGIGVGPSS FGHLTVQVDE EEDYDNED
|
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 48 | 53 | TRRRKS |
2 | 255 | 259 | PRRRK |
3 | 288 | 297 | RGRGRGRGRG |
4 | 288 | 298 | RGRGRGRGRGR |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT009305 | 0.0 | BT009305.1 Triticum aestivum clone wlm1.pk0016.f3:fis, full insert mRNA sequence. |
GenBank | KM078730 | 0.0 | KM078730.1 Triticum aestivum CCAAT-binding transcription factor C (NFYC-B6) mRNA, complete cds. |