PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28826
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family YABBY
Protein Properties Length: 223aa    MW: 25088.1 Da    PI: 10.396
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28826genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY392.9e-124714522134
     YABBY  22 lavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekr 122
               ++v vP + l+ +vtv+CGhC +l  ++ +    +++ + +            ++  ++ +   +  +++ +++      s  +++ +pr+p v++PPek+
  EMT28826  47 FLVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPPMVQPLSPN------------DH--HHPMGPFQGCTDCRRNQPLPPLASPTSSDASPRAPFVVKPPEKK 133
               689*******************9866444444444444443............22..22333334444444433333333566778899************ PP

     YABBY 123 qrvPsaynrfik 134
                r Psaynrf++
  EMT28826 134 HRLPSAYNRFMR 145
               **********85 PP
2YABBY47.66.5e-15161192131162
     YABBY 131 rfikeeiqrikasnPdishreafsaaaknWah 162
               + ++eeiqrika+ Pdi hreafs+aaknWa 
  EMT28826 161 CALREEIQRIKAAKPDIPHREAFSMAAKNWAK 192
               5689**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.1E-1648145IPR006780YABBY protein
PfamPF046901.5E-13163193IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006333Biological Processchromatin assembly or disassembly
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0009860Biological Processpollen tube growth
GO:0009909Biological Processregulation of flower development
GO:0010093Biological Processspecification of floral organ identity
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048441Biological Processpetal development
GO:0048443Biological Processstamen development
GO:0048479Biological Processstyle development
GO:0048481Biological Processplant ovule development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDKSRPYHAV SSQYSTKLNA HMSGQTTQVD LPRVIRRSFS MQLFRWFLVG VPCKRLMDTV  60
TVKCGHCNNL SFLSPRPPPM VQPLSPNDHH HPMGPFQGCT DCRRNQPLPP LASPTSSDAS  120
PRAPFVVKPP EKKHRLPSAY NRFMRLIGHG RKCTILVSCC CALREEIQRI KAAKPDIPHR  180
EAFSMAAKNW AKCDPRCSST VSASNSAPEP RIIVPGPQKY DRY
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5454361e-155AF545436.1 Triticum aestivum CRC-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156145.11e-103protein DROOPING LEAF-like isoform X2
SwissprotQ76EJ08e-77YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLM8CYA51e-164M8CYA5_AEGTA; Uncharacterized protein
STRINGEMT288261e-165(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.19e-36YABBY family protein