PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT28787 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 456aa MW: 50424.8 Da PI: 6.544 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 38.3 | 3.9e-12 | 130 | 266 | 8 | 126 |
NAM 8 hPtdeelvveyLkkkvegkk...lelee........vikevdiykvePwdLpkkvkaeekewyfFskrdkkya...tgkrknratksgyWkatgkdkevls 94 Ptd elv++yL++ +++ + + + d+ + Pw+Lp ++ ++ y+ + +d ++ g ++ t g+Wk + +d ++ + EMT28787 130 TPTDVELVQDYLRPAIQRLPtkrS---LwdlcsgphPLVNPDLPFMGPWELPGMI---ARNKYYLTDHDALAScfeLGGFRELHTPYGIWKVKTSDMAIRV 224 5*****************995540...24455555369999***********554...46789999999887744323344446899************** PP NAM 95 kkgel...........vglkktLvfykgrapkgektdWvmhey 126 +++e+ vg+k+t+ f+ + +g +t+W+m+ y EMT28787 225 QHNEVppvhihafnglVGVKRTMKFH-PYTYTGINTNWTMNVY 266 8666678888888899**********.678899*******988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.287.110 | 2.4E-23 | 2 | 92 | IPR001623 | DnaJ domain |
SuperFamily | SSF46565 | 1.19E-25 | 2 | 99 | IPR001623 | DnaJ domain |
SMART | SM00271 | 1.3E-22 | 5 | 63 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 18.623 | 6 | 71 | IPR001623 | DnaJ domain |
CDD | cd06257 | 1.62E-19 | 7 | 60 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 9.3E-22 | 7 | 68 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.1E-17 | 8 | 26 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.1E-17 | 26 | 41 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.1E-17 | 43 | 63 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 48 | 67 | IPR018253 | DnaJ domain, conserved site |
PRINTS | PR00625 | 1.1E-17 | 63 | 82 | IPR001623 | DnaJ domain |
PROSITE profile | PS51005 | 14.573 | 123 | 286 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.97E-14 | 130 | 285 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-8 | 130 | 266 | IPR003441 | NAC domain |
SMART | SM00614 | 4.2E-10 | 391 | 446 | IPR003656 | Zinc finger, BED-type |
PROSITE profile | PS50808 | 10.915 | 391 | 448 | IPR003656 | Zinc finger, BED-type |
SuperFamily | SSF57667 | 3.93E-6 | 394 | 443 | No hit | No description |
Pfam | PF02892 | 5.5E-5 | 394 | 439 | IPR003656 | Zinc finger, BED-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MVKDTAYYDT LGVSTDTSAA EMKKAYYVKA RWVHPDKNPG DPDAAREFQE LGEAYQVLCD 60 PVKRDSYDSS GKEGLSQDNM IDPAAVFSML FGRLNFEDYV GQLAALASAE AAGRKLEQDF 120 ELPDLTCTPT PTDVELVQDY LRPAIQRLPT KRSLWDLCSG PHPLVNPDLP FMGPWELPGM 180 IARNKYYLTD HDALASCFEL GGFRELHTPY GIWKVKTSDM AIRVQHNEVP PVHIHAFNGL 240 VGVKRTMKFH PYTYTGINTN WTMNVYFSLN GFTMDDGLVL CHVFETDSAP EYDDSPKCLG 300 CHPGACSGYH NGQAFGAPSN ASFNSTYLGS RPMHHHDTER RPDPRLSSFM AHLENLLLGD 360 PDPDNSADAG NSSARTGVPP TADHGQSKKR KKISDVWDYF TKIFACDING KVLTFAACNH 420 CCKVLTASSK GGTTHLARHA CPCKFKPVAA GRNVKD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2och_A | 3e-16 | 1 | 73 | 4 | 73 | Hypothetical protein dnj-12 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 387 | 391 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149352.1 | 0.0 | uncharacterized protein LOC109734557 isoform X1 | ||||
TrEMBL | A0A3B5ZNU0 | 0.0 | A0A3B5ZNU0_WHEAT; Uncharacterized protein | ||||
TrEMBL | M8CMX0 | 0.0 | M8CMX0_AEGTA; Chaperone protein dnaJ 10 | ||||
STRING | EMT28787 | 0.0 | (Aegilops tauschii) | ||||
STRING | Traes_1DS_4A2001BAC.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18590 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74250.1 | 5e-07 | DNAJ heat shock N-terminal domain-containing protein |