PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

NF-YC

Protein Properties

Length: 191aa MW: 21764.6 Da PI: 6.2745

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT28625	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	148.7	1.2e-46	13	116	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ql++fw++q ie+atd+knh lP +ri+ki+kadedv+misaeaP+l++kace+f le+t+rsw+ a+e krr l++sdiaaav+rt i+dfl+d EMT28625 13 QLQQFWAEQrseIEQATDIKNHPLPPTRIRKIMKADEDVRMISAEAPALFAKACEMFTLEMTMRSWMVAKEDKRRILQRSDIAAAVARTGIYDFLLDLFTS 113 89****99999**********************************************************************************9988 PP NF-YC 99 del 101 +e+ EMT28625 114 EET 116 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.37E-27	10	107	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.9E-30	27	98	IPR009072	Histone-fold
Pfam	PF00808	5.8E-18	36	98	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MIHSGPRKQQ QRQLQQFWAE QRSEIEQATD IKNHPLPPTR IRKIMKADED VRMISAEAPA 60 LFAKACEMFT LEMTMRSWMV AKEDKRRILQ RSDIAAAVAR TGIYDFLLDL FTSEETKQGF 120 LLPRAGQGQQ PMGAQAGAYP YYYAPEQQVA GASMVYGGPS TYVWQEPQVQ EQGHPSSTYV 180 WQEPPQQQEG P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-41	21	110	3	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190889.1	1e-131	nuclear transcription factor Y subunit C-4-like
Swissprot	Q655V5	2e-62	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	M8BUC1	1e-138	M8BUC1_AEGTA; Nuclear transcription factor Y subunit C-3
STRING	EMT28625	1e-139	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2703	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	5e-43	nuclear factor Y, subunit C4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]