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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT28549 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 736aa MW: 81358.9 Da PI: 7.1274 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9.4e-17 | 51 | 95 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE+e++++a k++G W+ I +++g ++t+ q++s+ qk+ EMT28549 51 REKWTEEEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 95 789*****************55.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.24E-15 | 45 | 99 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-10 | 45 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.24 | 46 | 100 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.4E-15 | 49 | 98 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.6E-14 | 50 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 51 | 94 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.99E-11 | 53 | 96 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 736 aa Download sequence Send to blast |
MALAEERDAL DSSRMPIGTG LSVDVAMEPN EEGMGEHPVK PRKPYTSTKQ REKWTEEEHE 60 KFLEALKLYG RSWRQIQEHI GTKTAVQIRS HAQKFFSKVV REPGAKIEIE IPPPRPKRKP 120 LHPYPRKRAN SCNGANAANG QSKLAHMSSS SGSDQENGSP VSVISAMQSD AFGSSMSNPS 180 SRSASPESSD EENIVLPMVN GGEGQQTGID QSHKEADQEN KDTGTSEEDS SDEVQVTSVK 240 LFGKTVVIPD PRKRCSPDTG SGHENGEQTS ESSNKGTSQA PLAVDIPTHT KGEQISQSSN 300 KATSQAPLAV EVPTYTNGEQ ISEFSYMATS QAPLAVEIQA YAAPPSGWVL PYNSFPLHFG 360 ESAEARIARL HMWWPYYGFP MVHPSGPSAV AHNGKATDES EAAKSPPVES SSDFVDNTQA 420 TASKQWKVLE SLGTAQAPPS VSNFQLKPST NSAFVRVKPI ISSGDEPEEP VPHIPLLRYI 480 LRFYLHIEIG GGLAREMRVV SCLRPVKSRA QVVADANMSC EEPKWKWIAE GFIATKRAHD 540 MVLDLIISLS DEENFATVLN RVCNPLPNKN HRLSLQSCGF KHKWAIHTIT GSKLHIRSWN 600 VFGETKRIPP LVDSQSLRVF DICVRKLSSS IALLLKLVRL FIDQDTVFPG DMFGRMQALE 660 EVSDICKVDK PEKFLEGLGH LTRLRKILMG ELLNCPDEDK CVLRYNGEKL ESSLNELGKH 720 NRRYLPSHRK MGKIFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951942 | 0.0 | JF951942.1 Triticum aestivum clone TaMYB59 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180978.1 | 0.0 | protein LHY-like isoform X1 | ||||
TrEMBL | M8C2S5 | 0.0 | M8C2S5_AEGTA; Myb-like protein G | ||||
STRING | EMT28549 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7783 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 8e-33 | MYB_related family protein |