PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT28540

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

FAR1

Protein Properties

Length: 1808aa MW: 206415 Da PI: 7.208

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT28540	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.8	6.3e-17	150	229	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF vr +ks+++ +g+ +++fvC +gk++e ++k ++r++C+a++++ +++d+ w++++++++HnH++ EMT28540 150 EFYNLYSWETGFGVRYAKSRSN-VKGTKCMQEFVCCYSGKPKEANSK---------SSRCQCQAMIRLLRTDDEGWYINEFRSNHNHHML 229 6**************99888.66668899*****9997655.........9****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.4E-13	150	229	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.5E-31	351	444	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.827	635	671	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1808 aa Download sequence Send to blast
MEFAETGISL LVRGSGSRPS NDSTEPPISP DSSGFSRHPG AMGTVREFVE DDPSGRFADL 60 LDTVEGVVPD GSDSDEKKST RAENIYVTMD DKVGWVSRKR RDVMPDERST SADRVIALEK 120 ALTGFADNHS ETVVIPSVGL TFDSINEAYE FYNLYSWETG FGVRYAKSRS NVKGTKCMQE 180 FVCCYSGKPK EANSKSSRCQ CQAMIRLLRT DDEGWYINEF RSNHNHHMLN TCAEKLRFPS 240 HRHIDKYTRE LVSQLRQNNV NVSKVYSIIA TFFGRVENVP FTKRCLRTLC GKLSREQADD 300 DVRNTMAIFS EMKAQDGEFT YNVQVDDESR IRTHMWTNGR SKTQFHHFGD VVTFDTTYKT 360 NLYDMPFGLF VGVNNHFQSV LYAGVLMRDE TEDTFKWIFD EFMKMMGGKK PITILTDQAR 420 AMEKAIEDVY PNSTHRWCKW HVLKKAKENL GAHYTKKSDF RAEFHKLVHE MLTIDEFEDG 480 WAALLDKYSL KNNPYLTQIY ETRLKWAKPY FAGKFCARQT STGRSETANH MLKQYVPPSC 540 SMNLFVKQYN KLQFDREQEE GFQEKRTRLS RAVLKVNTAL EVHASKIYTR KMFEILGEIL 600 YESGRYDVEE IIAKQKYIVT HQKAEHREKW FKCRFEVNVT DNLGYFSCIC GLFEHMGMVC 660 CHSLQVMVFL RLKQIPPRHI LKRWSIHGRD NLPGHLKHYQ QDMGPPDAPT FRHSALYITA 720 LEVANMGDRN PAAFEFMMSG LVELRTRGGE VCAFNDGLGV VEQQVSNNAV AVGPKLNTIS 780 SVRSVEGNRT KSRDATSVSV HPPMSQASEA SCPNGDGYNS EFSEAASRLM TNTEEELLAP 840 ERNKKRGRPT TSRDKAPYEK DSAKRSRFCS VCRGKGHKSS TCPDRGDVPK KERKRELHSG 900 STDGQFAMQA MGSVKPNPSE IESKEDGEMP VSTVEVYDLT EGFGENDPVA CVEQVEEIEP 960 ERAVDRLFTV VLYKRPWASW EDEDEVDSLA WYAPRKEMDS GEGAALNPLS MSDDPAAWAR 1020 RYRHRSRSWS RVYESRKKSK GSKIHVDSCF APKDGFEVVH QFTPDQRAAV VDIGLGGMLN 1080 VDNFTHMDRE FSWELLLNTD VERSALKISD GVYVTFNVIG IHNILGTPVE GEIEIDNRYV 1140 APTVDQIHKI RAMLDLEDVP LYLTPADLRW ALKKPCQTPF SEEDKVRTQV GFAMLCIATC 1200 FSPRDKRTTV PGEAYEICMD PSNLHMVNWG KYIYTELLRA AARCKQVLRE GRTPHVYGCP 1260 LVLQALYFDS VDCSAFVAPD LSVRPRIRFF TAGNLSKLIL GNTIPGSIPK KYGVMKPRMV 1320 PTQNLPWDTT QMRRKIAEAK AFIDRSLREH SLASTERNRK FSQRLAELNS RAICFVNNNM 1380 RMEIEKHMEN ERVMTRRHME ALIKYVEGTS RTEAINPGQF IPTTGVLHPV VIRPEPVLLS 1440 PPECEHLQHA GMGSSLMLPG EADVNQMAVP VLSSMPIRMS MGSFGQFYLN GGLASVSRPD 1500 EIMGFVHLGK RKERDFDEGG EVIIYQGRRD SDPPKEMNLL SRFGGIGDGD SGSSSSVPCT 1560 QHGRSPFSIP GFTYEFVSLA VANQGWENMT QCSRDVLDSA WFDHPGPPHI IMYGNEFYAN 1620 FHQPGGLDDK GFEVINMLMT EHDGRWHKNF DRSRFRHPLP PYFAILVPMK GGNGYHVMYI 1680 FDMMKKIVHV MDPKRAQYNI LELKRRHTGC MDRLLFALCK CIETFFDGWH VREDEFTRKA 1740 HHMMHEPSSS NDSTFYNIHC MWWFDGEYMQ KEIWQDQLTP FRQQLMRMVL TLPGNRALPP 1800 QDVVEPEV

Sequence ? help Back to Top

Protein Sequence Length: 1808 aa Download sequence Send to blast

MEFAETGISL LVRGSGSRPS NDSTEPPISP DSSGFSRHPG AMGTVREFVE DDPSGRFADL  60
LDTVEGVVPD GSDSDEKKST RAENIYVTMD DKVGWVSRKR RDVMPDERST SADRVIALEK  120
ALTGFADNHS ETVVIPSVGL TFDSINEAYE FYNLYSWETG FGVRYAKSRS NVKGTKCMQE  180
FVCCYSGKPK EANSKSSRCQ CQAMIRLLRT DDEGWYINEF RSNHNHHMLN TCAEKLRFPS  240
HRHIDKYTRE LVSQLRQNNV NVSKVYSIIA TFFGRVENVP FTKRCLRTLC GKLSREQADD  300
DVRNTMAIFS EMKAQDGEFT YNVQVDDESR IRTHMWTNGR SKTQFHHFGD VVTFDTTYKT  360
NLYDMPFGLF VGVNNHFQSV LYAGVLMRDE TEDTFKWIFD EFMKMMGGKK PITILTDQAR  420
AMEKAIEDVY PNSTHRWCKW HVLKKAKENL GAHYTKKSDF RAEFHKLVHE MLTIDEFEDG  480
WAALLDKYSL KNNPYLTQIY ETRLKWAKPY FAGKFCARQT STGRSETANH MLKQYVPPSC  540
SMNLFVKQYN KLQFDREQEE GFQEKRTRLS RAVLKVNTAL EVHASKIYTR KMFEILGEIL  600
YESGRYDVEE IIAKQKYIVT HQKAEHREKW FKCRFEVNVT DNLGYFSCIC GLFEHMGMVC  660
CHSLQVMVFL RLKQIPPRHI LKRWSIHGRD NLPGHLKHYQ QDMGPPDAPT FRHSALYITA  720
LEVANMGDRN PAAFEFMMSG LVELRTRGGE VCAFNDGLGV VEQQVSNNAV AVGPKLNTIS  780
SVRSVEGNRT KSRDATSVSV HPPMSQASEA SCPNGDGYNS EFSEAASRLM TNTEEELLAP  840
ERNKKRGRPT TSRDKAPYEK DSAKRSRFCS VCRGKGHKSS TCPDRGDVPK KERKRELHSG  900
STDGQFAMQA MGSVKPNPSE IESKEDGEMP VSTVEVYDLT EGFGENDPVA CVEQVEEIEP  960
ERAVDRLFTV VLYKRPWASW EDEDEVDSLA WYAPRKEMDS GEGAALNPLS MSDDPAAWAR  1020
RYRHRSRSWS RVYESRKKSK GSKIHVDSCF APKDGFEVVH QFTPDQRAAV VDIGLGGMLN  1080
VDNFTHMDRE FSWELLLNTD VERSALKISD GVYVTFNVIG IHNILGTPVE GEIEIDNRYV  1140
APTVDQIHKI RAMLDLEDVP LYLTPADLRW ALKKPCQTPF SEEDKVRTQV GFAMLCIATC  1200
FSPRDKRTTV PGEAYEICMD PSNLHMVNWG KYIYTELLRA AARCKQVLRE GRTPHVYGCP  1260
LVLQALYFDS VDCSAFVAPD LSVRPRIRFF TAGNLSKLIL GNTIPGSIPK KYGVMKPRMV  1320
PTQNLPWDTT QMRRKIAEAK AFIDRSLREH SLASTERNRK FSQRLAELNS RAICFVNNNM  1380
RMEIEKHMEN ERVMTRRHME ALIKYVEGTS RTEAINPGQF IPTTGVLHPV VIRPEPVLLS  1440
PPECEHLQHA GMGSSLMLPG EADVNQMAVP VLSSMPIRMS MGSFGQFYLN GGLASVSRPD  1500
EIMGFVHLGK RKERDFDEGG EVIIYQGRRD SDPPKEMNLL SRFGGIGDGD SGSSSSVPCT  1560
QHGRSPFSIP GFTYEFVSLA VANQGWENMT QCSRDVLDSA WFDHPGPPHI IMYGNEFYAN  1620
FHQPGGLDDK GFEVINMLMT EHDGRWHKNF DRSRFRHPLP PYFAILVPMK GGNGYHVMYI  1680
FDMMKKIVHV MDPKRAQYNI LELKRRHTGC MDRLLFALCK CIETFFDGWH VREDEFTRKA  1740
HHMMHEPSSS NDSTFYNIHC MWWFDGEYMQ KEIWQDQLTP FRQQLMRMVL TLPGNRALPP  1800
QDVVEPEV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020180988.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	M8BU25	0.0	M8BU25_AEGTA; Protein FAR1-RELATED SEQUENCE 5
STRING	EMT28540	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-82	FAR1-related sequence 5