PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28479
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 776aa    MW: 88729.8 Da    PI: 7.5762
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28479genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.3e-1611106299
               EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
        B3   2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
               fkvl     ++ +rl +p++f++ +      g++ ++++ +l+ ++g++W v+l  +k ++ ++lt+GW +Fv +n L+e +f++F++d++++f  +v+vf
  EMT28479  11 FKVL--VGDFA-RRLEIPRDFLSYIpevglRGSNISPVQAMLKRSEGKTWVVEL--EKVDRCVFLTTGWPKFVVDNSLREYEFLLFRHDKKMDF--MVSVF 104
               5555..34444.469*******555***9955667999****************..999999*************************9999999..99999 PP

               -S CS
        B3  98 rk 99 
                +
  EMT28479 105 GR 106
               76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-185109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-206113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.9017107IPR003340B3 DNA binding domain
CDDcd100172.37E-158104No hitNo description
SMARTSM010197.1E-1710107IPR003340B3 DNA binding domain
PfamPF023622.4E-1311106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MEEDEGRPRF FKVLVGDFAR RLEIPRDFLS YIPEVGLRGS NISPVQAMLK RSEGKTWVVE  60
LEKVDRCVFL TTGWPKFVVD NSLREYEFLL FRHDKKMDFM VSVFGRNACE KAVRSSGSAA  120
QATESLERKL PCDMLPTRKR GHSGDELTKT INNLRQSHSL VMIPDQSDTK IFPFQRSTKG  180
NGHISPQSFA DIHLHEVDGL KDELKIYLLL KVPMDDDKAK VIAEVMSRLH VDRVTVDLFC  240
ATLCLYKWDS DAAAEVLNTC RGKPQIPNQF LKQKLVLQFD FIKRELRHFF PTGDDCPPQI  300
RDSRESSLEE PNLSTQALQN YLPAVKSKLV DDHELCDLSY KQKRRIVKSR SQQISETPRR  360
SPRLAHLKNS GGSIDSGLKE KPEVLESSPS STIDQVEHRA GHACLLYEKP EHVFEGDRQH  420
AIGILGLFLI RTHNCLRTPY TAVKPICAFV GSLSQDFKRL KRTRGKVGLS EKPQHNQENE  480
EKIDQGNNGE IFEEQVDRNA AETSESFMGR DWIDPSPPTK SKLSSMIINE LCLTWKPSVH  540
TNSLENVLLH IQCDNFMKTI THVQGIIRSS PSDLHCAAII EAVVQKEILK WDSCLQDVDA  600
QRVVIALLEH AKKIKEIHNF NMESRKEEFS TKLQDQLKWQ LKELESVCTS LEFDYKKVTC  660
DGNIAVSTSQ EQKKKLHALQ DEIKGLQQSM MMENEIQKLV HQVAEHESLV QKSLMERVRV  720
KTVLKSYKQV LAEVKERLAS DELGLIDVDA LVKVEMDNLR KEIEISKGRL LNIIFK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165473.10.0B3 domain-containing protein Os03g0120900-like
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLM8C2K30.0M8C2K3_AEGTA; B3 domain-containing protein
STRINGEMT284790.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-13B3 family protein