PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB_related

Protein Properties

Length: 307aa MW: 34033.5 Da PI: 9.6361

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT28398	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.6	1.4e-13	128	172	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky EMT28398 128 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 172 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.97E-17	122	178	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.408	123	177	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-6	126	178	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-18	126	175	IPR006447	Myb domain, plants
SMART	SM00717	5.3E-11	127	175	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-11	128	172	IPR001005	SANT/Myb domain
CDD	cd00167	2.26E-8	130	173	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MSTLTYAQKH GMAVRGEVEN IAGEVVALPD EMDDDPTSWS CLPSCRAPTF RSPWSAGSEV 60 WGGARLGFAV WEGGSNGVDA WGSGSGLATP QLRHKRGRDR GRQSAASAVS GDDASKKVRK 120 PYTITKSRES WTEQEHDKFL EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKNG 180 TSEHVPPPRP KRKAAHPYPQ KASKNEPGYA LKTDPSAMLR NSGMNVAVSP WTHNSIPPVV 240 ASSFMKVMPD FAQVYSFLGS VFDPSTKGHL QKLKEMNPID VETALLLMRN LSINLTSPDF 300 EDQREYI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT008954	0.0	BT008954.1 Triticum aestivum clone wdk1c.pk011.f12:fis, full insert mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182047.1	1e-137	protein REVEILLE 6-like isoform X4
Swissprot	Q8H0W3	4e-92	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	M8C2Y6	0.0	M8C2Y6_AEGTA; Myb-like protein G
STRING	EMT28398	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1096	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.2	4e-78	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]