PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28380
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 336aa    MW: 38837.8 Da    PI: 10.3165
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28380genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.34.6e-21351151298
               HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                + r+++p +fa+++ g+  +++t++l +++g + +v++  +k+ ++ vl +GWk Fv+a++L++gDf++Fk+dg+s+   +v +f 
  EMT28380  35 FHERMIIPDRFAQHFRGQ--TGRTIKLASRHGYTCDVQI--TKNLEKLVLDSGWKAFVRAHNLRTGDFLLFKYDGHSQL--KVLIFG 115
               4568********888888..4569***************..********************************997777..787775 PP
2B352.87.4e-172433328100
               -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-SS CS
        B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrks 100
               s ++k++ l +++k+ae +   +  e +++t  + +g++W+v++++++k+++  l +GW +Fv+ n+L+ gD+++F+l ++ ++  ++v+++rks
  EMT28380 243 SIYGKTRTLEISRKYAEVYlPFV--E-QMVT-LQHHGKKWDVRCCVKNKKSKR-LMRGWMHFVRGNNLQLGDVCLFELLRNkKKYVMNVHIIRKS 332
               5567888899******9886333..2.2455.556*********985555443.567*********************99989999999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-2421119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-2422119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.3124117IPR003340B3 DNA binding domain
CDDcd100171.16E-2125114No hitNo description
SMARTSM010199.1E-1327117IPR003340B3 DNA binding domain
PfamPF023628.3E-1927114IPR003340B3 DNA binding domain
SuperFamilySSF1019361.44E-21228332IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-22228332IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.901236332IPR003340B3 DNA binding domain
CDDcd100178.14E-18238330No hitNo description
SMARTSM010194.8E-11239332IPR003340B3 DNA binding domain
PfamPF023623.0E-15242331IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSKPWKKRKE LDEHRYWNHT EEQDKHFFKV MIGDFHERMI IPDRFAQHFR GQTGRTIKLA  60
SRHGYTCDVQ ITKNLEKLVL DSGWKAFVRA HNLRTGDFLL FKYDGHSQLK VLIFGPSGCE  120
KIQACNLKKN VAPGKEWWGN TAGIVNTCHN LPMEFPHSGR QIRPSNDSSR QGNDIIDISS  180
SSSPSDSAGG ISSSEDDHSL SGCILAKGTL LNLNHLQKKQ LEEKIRAINS EIPIYGCVIR  240
KSSIYGKTRT LEISRKYAEV YLPFVEQMVT LQHHGKKWDV RCCVKNKKSK RLMRGWMHFV  300
RGNNLQLGDV CLFELLRNKK KYVMNVHIIR KSLYKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162977.10.0putative B3 domain-containing protein Os03g0621600
SwissprotQ851V51e-101Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A3B6H4T60.0A0A3B6H4T6_WHEAT; Uncharacterized protein
TrEMBLM8BTM80.0M8BTM8_AEGTA; Putative B3 domain-containing protein
STRINGEMT283800.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-17B3 family protein