PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EMT28341

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

C3H

Protein Properties

Length: 683aa MW: 73817.1 Da PI: 5.1769

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT28341	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.7e-06	418	439	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC+f++ G C+ G+ CkF+H+ EMT28341 418 KLCHFYMH-GKCQQGNACKFSHD 439 798888.***********7 PP
2	zf-CCCH	18.1	4.9e-06	445	467	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C +far G C Gd C++ H EMT28341 445 KSKPCTHFAR-GSCLKGDDCPYDH 467 6789****.*********** PP
3	zf-CCCH	22	2.9e-07	473	494	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f ++G C +Gd+CkF+H+ EMT28341 473 PCHNFVENGMCFRGDKCKFSHV 494 7********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.187	414	441	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0072	415	440	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.55E-6	415	439	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.5E-4	442	468	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.281	443	470	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.2E-5	443	469	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-5	445	468	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0037	471	495	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.1E-5	472	495	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-4	473	494	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.9E-4	473	493	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.864	473	496	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence Send to blast
MEDSLVPPVP PAPTTLFLTR RRSHLDSASY RTLSRLFSHC LHHRPSQLAA PAPLEVEPAA 60 ANPICDESPQ GCSVPPEDAE SERGKDLGEE ETAVRTSVIE NPSPAAVDAA TGNPIADPAV 120 APQRYMEHQV AGVQRVEGVT DMVVGGNVCR ETVALLEELG AEDVLRSMKD CLEGEVDELA 180 EPGVVVVNDD EHLLLDTMMT NFSGLIADAS GGTTSMLNYG VSGGEPHNDG NIAEGVKELG 240 AGTEEDRPMG DSDQHSVDGG VVEEGEIEGD MQALDVDESD DSELKDADDE ELGEDFANRV 300 LGENESSGQD IRCLNLLSTP KIKGTSDLVL NKEGYIKDDA LKHVTRAQAV SYDEIVEWNE 360 TPLPDTEAPK PGKRKRHLTE ERKAKKTKNK RVKRAQQRIA DGVKRLKLAP VIKPKPVKLC 420 HFYMHGKCQQ GNACKFSHDT TPLTKSKPCT HFARGSCLKG DDCPYDHELS KYPCHNFVEN 480 GMCFRGDKCK FSHVVPTADG PSKPDAKKSD ASLVSEKPGR EQTSSQKAST VHDGERVTSA 540 PTKHYSILKN LAGISVNALK ASTGTPKGVQ FRPSSKDRSN SSMLHQDALP IEKHMYTNGS 600 KHQNFGGPQA EEGDKNGIPN KQRSAPLFDE KNSSKEASSH PSSDPERTSL PTGSTTVLGS 660 LSTQHEVSEA SRILQEFLFG AGS

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence Send to blast

MEDSLVPPVP PAPTTLFLTR RRSHLDSASY RTLSRLFSHC LHHRPSQLAA PAPLEVEPAA  60
ANPICDESPQ GCSVPPEDAE SERGKDLGEE ETAVRTSVIE NPSPAAVDAA TGNPIADPAV  120
APQRYMEHQV AGVQRVEGVT DMVVGGNVCR ETVALLEELG AEDVLRSMKD CLEGEVDELA  180
EPGVVVVNDD EHLLLDTMMT NFSGLIADAS GGTTSMLNYG VSGGEPHNDG NIAEGVKELG  240
AGTEEDRPMG DSDQHSVDGG VVEEGEIEGD MQALDVDESD DSELKDADDE ELGEDFANRV  300
LGENESSGQD IRCLNLLSTP KIKGTSDLVL NKEGYIKDDA LKHVTRAQAV SYDEIVEWNE  360
TPLPDTEAPK PGKRKRHLTE ERKAKKTKNK RVKRAQQRIA DGVKRLKLAP VIKPKPVKLC  420
HFYMHGKCQQ GNACKFSHDT TPLTKSKPCT HFARGSCLKG DDCPYDHELS KYPCHNFVEN  480
GMCFRGDKCK FSHVVPTADG PSKPDAKKSD ASLVSEKPGR EQTSSQKAST VHDGERVTSA  540
PTKHYSILKN LAGISVNALK ASTGTPKGVQ FRPSSKDRSN SSMLHQDALP IEKHMYTNGS  600
KHQNFGGPQA EEGDKNGIPN KQRSAPLFDE KNSSKEASSH PSSDPERTSL PTGSTTVLGS  660
LSTQHEVSEA SRILQEFLFG AGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365851	0.0	AK365851.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038E14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184316.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_020184317.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_020184318.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_020184319.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_020184320.1	0.0	zinc finger CCCH domain-containing protein 7
Swissprot	Q657B3	0.0	C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBL	A0A453EXS5	0.0	A0A453EXS5_AEGTS; Uncharacterized protein
TrEMBL	M8CX27	0.0	M8CX27_AEGTA; Zinc finger CCCH domain-containing protein 7
STRING	EMT28341	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8838	37	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	4e-07	C3H family protein

Publications ? help Back to Top
Noller B,Fischer I Photodissociation dynamics of the 2-propyl radical, C3H7. J Chem Phys, 2007. 126(14): p. 144302 [PMID:17444707] Ali MA,Dillstrom VT,Lai JY,Violi A Ab initio investigation of the thermal decomposition of n-butylcyclohexane. J Phys Chem A, 2014. 118(6): p. 1067-76 [PMID:24344976]