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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT28005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 223aa MW: 25784.8 Da PI: 5.8136 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.8 | 4.4e-07 | 59 | 83 | 1 | 25 |
TSSS-HHHHHHHHHHHHHTTTT-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWk 25 +g+W +eEd++++d+v+++G+ W+ EMT28005 59 KGPWIQEEDDKIIDLVRKYGPTKWS 83 79**********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.45E-10 | 34 | 84 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-4 | 34 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.899 | 54 | 83 | IPR017877 | Myb-like domain |
CDD | cd00167 | 6.89E-4 | 61 | 84 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-8 | 66 | 85 | IPR009057 | Homeodomain-like |
SMART | SM00212 | 1.5E-46 | 79 | 222 | No hit | No description |
Pfam | PF00179 | 2.1E-43 | 85 | 218 | IPR000608 | Ubiquitin-conjugating enzyme E2 |
PROSITE profile | PS50127 | 39.955 | 86 | 215 | IPR000608 | Ubiquitin-conjugating enzyme E2 |
SuperFamily | SSF54495 | 9.99E-49 | 86 | 219 | IPR016135 | Ubiquitin-conjugating enzyme/RWD-like |
CDD | cd00195 | 5.65E-53 | 86 | 217 | No hit | No description |
Gene3D | G3DSA:3.10.110.10 | 2.2E-58 | 86 | 218 | IPR016135 | Ubiquitin-conjugating enzyme/RWD-like |
PROSITE pattern | PS00183 | 0 | 153 | 168 | IPR023313 | Ubiquitin-conjugating enzyme, active site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MPWIAHQPGM CFDDNPSRIL LVPIFYTNVY LMAAELFLDR TEVQYLHPWQ KVLNPELIKG 60 PWIQEEDDKI IDLVRKYGPT KWSHCKDLQK DPPTSAQEGP VGEDMFQWQA TIMGPLDSPF 120 TGGLFLVNIH FPLDYPFKPP KVSFRTKVFH FHFHPNINSN GNICLDILKE QWSPTLTISK 180 VLLSIYLLLT DPNPNDPLVP EIAHMYKTDW AKYELTASYS CPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4x57_A | 7e-73 | 86 | 217 | 42 | 169 | Ubiquitin-conjugating enzyme E2 8 |
4x57_C | 7e-73 | 86 | 217 | 42 | 169 | Ubiquitin-conjugating enzyme E2 8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selective degradation of short-lived and abnormal proteins. {ECO:0000255|PROSITE-ProRule:PRU00388}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY736121 | 1e-126 | AY736121.1 Triticum aestivum ubiquitin-conjugating enzyme mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150452.1 | 1e-133 | uncharacterized protein LOC109735650 | ||||
Swissprot | P35135 | 3e-73 | UBC4_SOLLC; Ubiquitin-conjugating enzyme E2-17 kDa | ||||
TrEMBL | M8BSM2 | 1e-164 | M8BSM2_AEGTA; Ubiquitin-conjugating enzyme E2-17 kDa | ||||
STRING | EMT28005 | 1e-165 | (Aegilops tauschii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 4e-22 | myb domain protein 3r-5 |