PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27915
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 304aa    MW: 33360.9 Da    PI: 4.7514
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27915genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015210232123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               y C  Cgk+F  + + ++H +++
  EMT27915 210 YACRRCGKRFAVRGDWRTHEKNC 232
               89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.642161190IPR007087Zinc finger, C2H2
SuperFamilySSF576671.61E-6196230No hitNo description
Gene3DG3DSA:3.30.160.601.2E-6196230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704210230IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MESAGLGVRY FEWLRPRSPR ASSPSSMPSS LSSPSSDCLV PGEDHRSTML CLPLLGRVGA  60
GEETTSGGTP VGAQTSPIKE ELSGITEDAG VDLNIGLPAG GGYCSEEEVP PMAMSMDEDE  120
EEEEVETEDE EKPRCTCGAT GGTSQYWIPS AAEILVGSTQ FSCAVCNKTF NRFNNMQGCR  180
NNIDHPRARP LKDFRTLQTH YRRKHGARPY ACRRCGKRFA VRGDWRTHEK NCGKLWFCVC  240
GSDFKHKRSL KDHVRSFGGG HAPHIIESVA VDEDEDEDDE HDDGDLHLYD ENGNAGDGSD  300
MVLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732990.0AK373299.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176127.11e-125protein TRANSPARENT TESTA 1-like
TrEMBLM8BSE40.0M8BSE4_AEGTA; Protein TRANSPARENT TESTA 1
STRINGEMT279150.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.14e-70C2H2-like zinc finger protein