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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT27321 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C3H | ||||||||
Protein Properties | Length: 144aa MW: 16445.4 Da PI: 8.0076 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.9 | 3e-07 | 43 | 64 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ Gd C +aHg EMT27321 43 PCPEFRKGGSCRKGDGCEYAHG 64 8********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.13E-5 | 37 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.85 | 38 | 66 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-4 | 38 | 65 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-5 | 42 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-5 | 43 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MYSFKVKPCS RAYSHDWTEC PFVHPGENAR RRDPRRYSYS CVPCPEFRKG GSCRKGDGCE 60 YAHGVFECWL HPAQYRTRLC KDEGDELHKF RKSASFGFRG QSAMPAAAPA TPAEPDVSWV 120 NSLVKDGHTG DHFPQWLEQE QMVA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354565 | 1e-135 | AK354565.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1008I01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569054.1 | 7e-56 | zinc finger CCCH domain-containing protein 33 | ||||
Swissprot | Q688R3 | 2e-56 | C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33 | ||||
TrEMBL | M8CU69 | 1e-104 | M8CU69_AEGTA; Zinc finger CCCH domain-containing protein 33 | ||||
STRING | EMT27321 | 1e-105 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6013 | 21 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 3e-52 | C3H family protein |
Publications ? help Back to Top | |||
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