PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT27008

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bHLH

Protein Properties

Length: 569aa MW: 63676 Da PI: 4.7923

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT27008	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7.1e-13	380	427	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h ErrRR+++N+ f L++l+P+ + K++Ka+iL +++ Y+k+L+ EMT27008 380 KTHVLSERRRREKLNEMFLVLKSLVPSiN------KMDKASILAETITYLKELE 427 58999********************77......**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.8E-22	20	135	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	16.431	377	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-10	380	427	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.16E-15	380	431	No hit	No description
SuperFamily	SSF47459	8.37E-18	380	438	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-18	381	436	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-16	383	432	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009957	Biological Process	epidermal cell fate specification
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence Send to blast
MALSAAPAGQ APPLGKQLSY QLAAAVRSIN WTYTIFWSMS TSQRPPGVLT WKDGFYNGEV 60 KTRKIISSTT TEVTANDLIL QRSEQLRELY ESLLSGKADH RARRPAASLS PEDLGEAEWY 120 YTLSMTYSFR PGQGLSMDDS INGGGGVRLE YDGTPGNNGG YAYLYRSDRV ITDRFSVQPQ 180 WLVTVYVQCT FILDKVLEDP DMVNRIGTSF WELPFQACLE SEALSSSPST NETRNREVEI 240 VVFEDLDHNV AKGFISELGE VESMSDANIN CITEEVDEFY GLIEELDVCA LEDNWVMERS 300 FEFMSSLEMA PDMDAPRIDD NTITLSSSVN GCRPSCFTVW KRSSDWEGMD VRDPGESQKL 360 LKKVLAGGGW TMRAQESNIK THVLSERRRR EKLNEMFLVL KSLVPSINKM DKASILAETI 420 TYLKELEQRV EELESSRAPS WHPKEATGQG LHDVAGRKKI KLSTGCKRKA PESEREDDDG 480 PSNVVNVTMM DKEVILEVQC RWKKLLMKRV FDAIKSLHLD IISVHTSTPG GLLDLKIRAT 540 DQVAAGSATV APGMITEALQ KAISNNWQN

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence Send to blast

MALSAAPAGQ APPLGKQLSY QLAAAVRSIN WTYTIFWSMS TSQRPPGVLT WKDGFYNGEV  60
KTRKIISSTT TEVTANDLIL QRSEQLRELY ESLLSGKADH RARRPAASLS PEDLGEAEWY  120
YTLSMTYSFR PGQGLSMDDS INGGGGVRLE YDGTPGNNGG YAYLYRSDRV ITDRFSVQPQ  180
WLVTVYVQCT FILDKVLEDP DMVNRIGTSF WELPFQACLE SEALSSSPST NETRNREVEI  240
VVFEDLDHNV AKGFISELGE VESMSDANIN CITEEVDEFY GLIEELDVCA LEDNWVMERS  300
FEFMSSLEMA PDMDAPRIDD NTITLSSSVN GCRPSCFTVW KRSSDWEGMD VRDPGESQKL  360
LKKVLAGGGW TMRAQESNIK THVLSERRRR EKLNEMFLVL KSLVPSINKM DKASILAETI  420
TYLKELEQRV EELESSRAPS WHPKEATGQG LHDVAGRKKI KLSTGCKRKA PESEREDDDG  480
PSNVVNVTMM DKEVILEVQC RWKKLLMKRV FDAIKSLHLD IISVHTSTPG GLLDLKIRAT  540
DQVAAGSATV APGMITEALQ KAISNNWQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	385	390	ERRRRE
2	386	391	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163619.1	0.0	anthocyanin regulatory R-S protein-like isoform X2
Swissprot	P13526	1e-139	ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBL	M8BYZ4	0.0	M8BYZ4_AEGTA; Anthocyanin regulatory Lc protein
STRING	EMT27008	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	2e-65	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Ludwig SR,Habera LF,Dellaporta SL,Wessler SR Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]