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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT26451 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 381aa MW: 41764.5 Da PI: 7.9207 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.5 | 1.7e-14 | 29 | 73 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW ++E+e+++da ++G + W++I +++ ++t+ q++s+ qky EMT26451 29 RERWCPDEHERFLDALLRFGRD-WRKIEEHVR-TKTAVQIRSHAQKY 73 78******************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.35E-15 | 23 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.683 | 24 | 78 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-7 | 27 | 80 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-8 | 28 | 76 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 7.9E-16 | 28 | 76 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.7E-12 | 29 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.83E-7 | 31 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MAERGGSGEG TSSSPGKKAR KPYTITRPRE RWCPDEHERF LDALLRFGRD WRKIEEHVRT 60 KTAVQIRSHA QKYFLKVQRL GLAAGLPPPQ HPSRRLAMSQ QQISPADGTA VLHGQPQHCP 120 TDMQNSDWAG SSGTSAWVSH GGAGSQTEPA AATHPGGSSF MGAPSFDDTS MDWTGSGSTG 180 EASAIADAED ETIPLPLSPD DMHFARVYRF IGDIFDPATP CRIEAHLQKL KDMDGITVKT 240 ILLVLRNLET NLTAPQFEPI LGRNIFLLIV GNLRISLYNF ALAFGKAPCL DLLCLEPSEL 300 DVLPCWQGKT PAHSGRSEAD WTWLLNGVYF SGRGLFAGPN KLGKFHLGPN NARGLMMSLL 360 VDPDKIAIFP HLRKQLIKDT P |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 5e-70 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153532.1 | 1e-175 | protein REVEILLE 8-like | ||||
TrEMBL | M8CRY2 | 0.0 | M8CRY2_AEGTA; Myb-like protein G | ||||
STRING | EMT26451 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02840.3 | 1e-44 | LHY/CCA1-like 1 |