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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT26426 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | FAR1 | ||||||||
Protein Properties | Length: 650aa MW: 74918.5 Da PI: 6.8293 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 46.9 | 9e-15 | 136 | 224 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA GF v +++++k+ ++e + + +C+k k++++k + er++ +t+C + k++ + ++w+vt+ eHnHel EMT26426 136 EFYQRYAIFHGFAVNTEYHRKK--TNEYSRGEIRCYKARKNKKSKGVapVVPERKRGIIVKTECPVRCKLNTD-GARWVVTEYFDEHNHELI 224 6*************99998887..7779*************99988788999****************99999.9***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-11 | 136 | 224 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.7E-30 | 349 | 442 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 650 aa Download sequence Send to blast |
MAKTYEFYGK AQDHHATRGN KRQPGPSTTI NSGAGTSTAG TSEHTEGAFH QQVNNTATNN 60 AESVSELAIV PAMMTSTPLH TSTSNTQADE TTADTEVNDE TDDEAQGDEE DGQSEIMIPQ 120 PPYVGQRFGS FEDAKEFYQR YAIFHGFAVN TEYHRKKTNE YSRGEIRCYK ARKNKKSKGV 180 APVVPERKRG IIVKTECPVR CKLNTDGARW VVTEYFDEHN HELIKKFDLV KFLSAHKGFS 240 PLEKKFVKLL HDCNVGPSRM VQILSLIHSG DGRLSSMPYI PADVTNLKAK YRRESRLADI 300 EDTIACFEEK AKTDTDFFYW IRLDDEDRVR NMYWVDGAAR RAYTHFRDCI SFDATYLTNM 360 YKMPRAPFIG INNHNQSLQF GCRLVRNEDT DGYTWLFKTL LECMGGLAPM NIITDQGFSM 420 RASIEEVFPL AAHRHCRWHI IKKAEETLGP FFADRPELHK AFELCVDHSL TVEEFERSWT 480 AMIETYQVQD NETLTSLWEK RMYWVPAYFV QCFFPFLQTT QRSEGFNAVL KRCHVKYYAV 540 ALWKQTTQEK CGKNKDFHAI IDFRYVCYVT TYLNIRFQEE IKRASMYTTY QVDGHTVKVC 600 SLLGMSNSEP EDPDKGRNYF VKASINEGEY YCQCCKFERD GIVCCHCWGT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164923.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | M8CRW2 | 0.0 | M8CRW2_AEGTA; Uncharacterized protein | ||||
STRING | EMT26426 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-71 | FAR1-related sequence 5 |