PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT26393 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NF-YB | ||||||||
Protein Properties | Length: 293aa MW: 31494.5 Da PI: 5.3514 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 153.9 | 2.9e-48 | 22 | 117 | 1 | 96 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 vreqdr++Pianv+rim+++lPa+akis+dake +qecvsefisfvt+ea+++c+ e+rkt+n++d++wal lGf+dyv pl+v+l++ r+ e++ EMT26393 22 VREQDRLMPIANVIRIMRRALPAHAKISDDAKEAIQECVSEFISFVTGEANERCHMEHRKTVNAEDIVWALNRLGFDDYVVPLSVFLHRMRDPEAA 117 69*****************************************************************************************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.3E-45 | 18 | 119 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.95E-34 | 25 | 124 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-24 | 29 | 92 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.8E-14 | 56 | 74 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 59 | 75 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.8E-14 | 75 | 93 | No hit | No description |
PRINTS | PR00615 | 1.8E-14 | 94 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MENADVPNGA TAPAPTQATP VVREQDRLMP IANVIRIMRR ALPAHAKISD DAKEAIQECV 60 SEFISFVTGE ANERCHMEHR KTVNAEDIVW ALNRLGFDDY VVPLSVFLHR MRDPEAATGG 120 AAAGDRRAVT SAPPRAAPPV LHAMPLHAQM QRPMYAPPAL VQVQNQMQRP IYAPPAPMQV 180 QNQVQWPMYA PPPPVQVQMQ RGVYAPQAPV QGYAVGITPV RANVDGQCQV FGGERAVAQQ 240 YYGYGYGEGS SNGGACADEE SSSNSVPVPG KGTGEPEPEP AAEESQGKPI QSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-49 | 22 | 113 | 6 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU902785 | 0.0 | GU902785.1 Triticum monococcum nuclear transcription factor Y subunit B1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178158.1 | 0.0 | nuclear transcription factor Y subunit B-8-like | ||||
TrEMBL | A0A3B6TCT0 | 0.0 | A0A3B6TCT0_WHEAT; Uncharacterized protein | ||||
TrEMBL | M8BX70 | 0.0 | M8BX70_AEGTA; Nuclear transcription factor Y subunit B-6 | ||||
STRING | EMT26393 | 0.0 | (Aegilops tauschii) | ||||
STRING | Traes_7DS_A1673EBA1.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 5e-51 | nuclear factor Y, subunit B6 |