PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT26392
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family FAR1
Protein Properties Length: 1207aa    MW: 136151 Da    PI: 5.2214
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT26392genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.64.2e-139161007190
      FAR1    1 kfYneYAkevGFsvrkskskkskrnge.itkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90  
                kfYn+YA ++GF +++s++kk ++ ++  t++        +++++  +    +++r+++   r +Cka++ v ++ +g+  vt ++ eH+H+l+
  EMT26392  916 KFYNDYAFKLGFGTQISSTKKPDKPETsSTSESIATE-TSNSSRRPGAemdVTRTRQKNRILRHDCKAHMIVGLR-EGRLTVTCFVAEHTHPLM 1007
                6****************99998444430333333332.2222222222355889999******************.9***************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.40.207.2E-5117121No hitNo description
SuperFamilySSF506924.91E-2835119IPR009010Aspartate decarboxylase-like domain
PfamPF023598.6E-2339120IPR003338CDC48, N-terminal subdomain
SMARTSM010732.2E-3239122IPR003338CDC48, N-terminal subdomain
TIGRFAMsTIGR012437.5E-26040793IPR005938AAA ATPase, CDC48 family
SuperFamilySSF545852.75E-27121230IPR029067CDC48 domain 2-like
Gene3DG3DSA:3.10.330.104.6E-37122230IPR029067CDC48 domain 2-like
SMARTSM010721.4E-6157222IPR004201CDC48, domain 2
PfamPF029331.3E-8168221IPR004201CDC48, domain 2
SuperFamilySSF525401.4E-66230492IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.2E-94233507IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000092.97E-31237400No hitNo description
SMARTSM003821.1E-24267403IPR003593AAA+ ATPase domain
PfamPF000047.3E-47271400IPR003959ATPase, AAA-type, core
PROSITE patternPS006740371389IPR003960ATPase, AAA-type, conserved site
SuperFamilySSF525405.78E-75502790IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.6E-66508685IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000096.11E-31510677No hitNo description
SMARTSM003821.7E-24540679IPR003593AAA+ ATPase domain
PfamPF000043.7E-46544677IPR003959ATPase, AAA-type, core
PROSITE patternPS006740647665IPR003960ATPase, AAA-type, conserved site
Gene3DG3DSA:1.10.8.603.3E-20686777No hitNo description
PfamPF031015.4E-119161007IPR004330FAR1 DNA binding domain
PfamPF105511.1E-1911311206IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051301Biological Processcell division
GO:0005524Molecular FunctionATP binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1207 aa     Download sequence    Send to blast
MATPNPPPPQ QDEPSSSADP KAKKDYSTAI LERKKSPNRL VVDEATNDDN SVVALHPDTM  60
ERLQLFRGDT VLLKGKKRKD TICIVLADDT CEEPKVRMNK TVRKNLRVRL GDVVSVHQCP  120
DVKYGKRVHI LPIDDTVEGI TGNLFDAFLK LASKNLFTNI VFVLCFSAYF LEAYRPLRKG  180
DLFLVRGGMR SVEFKVIETD PAEYCIVAPD TEIFCDGEPV KREDEERLDD VGYDDVGGVR  240
KQMAQIRELV ELPLRHPQLF KSIGVKPPKG ILLFGPPGSG KTLIARAVAN ETGAFFFLIN  300
GPEIMSKLAG ESESNLRKAF EEAEKNAPSI IFIDEIDSIA PKREKTNGEV ERRIVSQLLT  360
LMDGLKSRAH VIVMGATNRP NSIDPALRRF GRFDREIDIG VPDEVGRLEV LRIHTKNMKL  420
AEDVELEHIS RDTHGYVGAD LAALCTEAAL QCIREKMDII DLEDETIDAE ILNSMAVTND  480
HFKTALTTSN PSALRETVVE VPNVSWEDIG GLENVKRELQ ETVQYPVEHP EKFEKFGMSP  540
SKGVLFYGPP GCGKTLLAKA IANECQANFI SIKGPELLTM WFGESEANVR EIFDKARGSA  600
PCVLFFDELD SIATQRGSSV GDAGGAADRV LNQLLTEMDG MNAKKTVFII GATNRPDIID  660
PALLRPGRLD QLIYIPLPDV ESRHQIFKAC LRKSPLAKDI DLSALAKYTQ GFSGADITEI  720
CQRACKYAIR ENIEKDIERE RRRKDNPEAM EEDEVDEVAE IRAAHFEESM KYARRSVSDA  780
DIRKYQAFAQ TLQQSRGFGS EFRCWDPTQI ELAGGHLFEN SRRSQHRPRP RGFLREREYH  840
SETTSIRSNQ GSWGAGGEGE ESYVQGNFSV DNHEDSEGLL HADDVMQDDS DDEDVSSQPL  900
SPYVGMAFDT FEDAQKFYND YAFKLGFGTQ ISSTKKPDKP ETSSTSESIA TETSNSSRRP  960
GAEMDVTRTR QKNRILRHDC KAHMIVGLRE GRLTVTCFVA EHTHPLMQQP ERVRYYRSHR  1020
KIPAEDYELL LTLHDINLSN SDCMSFLGRI HGGDPRILPY VKRDVVNERA KLQEAITQQD  1080
MDMTVKYFER RKAENPEFFF AKQKDPATNF VTALFWVDGR ARALYPKYKD CVFFDITFCT  1140
NRYNMPFGPI VGINNHLQTI SLGCALLPDE NIETFKWVFE QWMVVMDNDH PKNIMTDQDQ  1200
AMATTIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1r7r_A0.0158032772Transitional endoplasmic reticulum ATPase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion) (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2484080.0AK248408.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf132h22, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169039.10.0cell division control protein 48 homolog E-like
SwissprotQ9LZF60.0CD48E_ARATH; Cell division control protein 48 homolog E
TrEMBLM8CGS30.0M8CGS3_AEGTA; Cell division control 48-E-like protein
STRINGEMT263920.0(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-36FAR1-related sequence 5
Publications ? help Back to Top
  1. Rancour DM,Dickey CE,Park S,Bednarek SY
    Characterization of AtCDC48. Evidence for multiple membrane fusion mechanisms at the plane of cell division in plants.
    Plant Physiol., 2002. 130(3): p. 1241-53
    [PMID:12427991]
  2. Dixon DP,Skipsey M,Grundy NM,Edwards R
    Stress-induced protein S-glutathionylation in Arabidopsis.
    Plant Physiol., 2005. 138(4): p. 2233-44
    [PMID:16055689]
  3. Bayer EM, et al.
    Arabidopsis cell wall proteome defined using multidimensional protein identification technology.
    Proteomics, 2006. 6(1): p. 301-11
    [PMID:16287169]
  4. Giavalisco P,Kapitza K,Kolasa A,Buhtz A,Kehr J
    Towards the proteome of Brassica napus phloem sap.
    Proteomics, 2006. 6(3): p. 896-909
    [PMID:16400686]
  5. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  6. Rajjou L, et al.
    Proteomic investigation of the effect of salicylic acid on Arabidopsis seed germination and establishment of early defense mechanisms.
    Plant Physiol., 2006. 141(3): p. 910-23
    [PMID:16679420]
  7. Park S,Rancour DM,Bednarek SY
    In planta analysis of the cell cycle-dependent localization of AtCDC48A and its critical roles in cell division, expansion, and differentiation.
    Plant Physiol., 2008. 148(1): p. 246-58
    [PMID:18660433]