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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT26392 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | FAR1 | ||||||||
Protein Properties | Length: 1207aa MW: 136151 Da PI: 5.2214 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 41.6 | 4.2e-13 | 916 | 1007 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrnge.itkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfYn+YA ++GF +++s++kk ++ ++ t++ +++++ + +++r+++ r +Cka++ v ++ +g+ vt ++ eH+H+l+ EMT26392 916 KFYNDYAFKLGFGTQISSTKKPDKPETsSTSESIATE-TSNSSRRPGAemdVTRTRQKNRILRHDCKAHMIVGLR-EGRLTVTCFVAEHTHPLM 1007 6****************99998444430333333332.2222222222355889999******************.9***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.40.20 | 7.2E-51 | 17 | 121 | No hit | No description |
SuperFamily | SSF50692 | 4.91E-28 | 35 | 119 | IPR009010 | Aspartate decarboxylase-like domain |
Pfam | PF02359 | 8.6E-23 | 39 | 120 | IPR003338 | CDC48, N-terminal subdomain |
SMART | SM01073 | 2.2E-32 | 39 | 122 | IPR003338 | CDC48, N-terminal subdomain |
TIGRFAMs | TIGR01243 | 7.5E-260 | 40 | 793 | IPR005938 | AAA ATPase, CDC48 family |
SuperFamily | SSF54585 | 2.75E-27 | 121 | 230 | IPR029067 | CDC48 domain 2-like |
Gene3D | G3DSA:3.10.330.10 | 4.6E-37 | 122 | 230 | IPR029067 | CDC48 domain 2-like |
SMART | SM01072 | 1.4E-6 | 157 | 222 | IPR004201 | CDC48, domain 2 |
Pfam | PF02933 | 1.3E-8 | 168 | 221 | IPR004201 | CDC48, domain 2 |
SuperFamily | SSF52540 | 1.4E-66 | 230 | 492 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 4.2E-94 | 233 | 507 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
CDD | cd00009 | 2.97E-31 | 237 | 400 | No hit | No description |
SMART | SM00382 | 1.1E-24 | 267 | 403 | IPR003593 | AAA+ ATPase domain |
Pfam | PF00004 | 7.3E-47 | 271 | 400 | IPR003959 | ATPase, AAA-type, core |
PROSITE pattern | PS00674 | 0 | 371 | 389 | IPR003960 | ATPase, AAA-type, conserved site |
SuperFamily | SSF52540 | 5.78E-75 | 502 | 790 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 3.6E-66 | 508 | 685 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
CDD | cd00009 | 6.11E-31 | 510 | 677 | No hit | No description |
SMART | SM00382 | 1.7E-24 | 540 | 679 | IPR003593 | AAA+ ATPase domain |
Pfam | PF00004 | 3.7E-46 | 544 | 677 | IPR003959 | ATPase, AAA-type, core |
PROSITE pattern | PS00674 | 0 | 647 | 665 | IPR003960 | ATPase, AAA-type, conserved site |
Gene3D | G3DSA:1.10.8.60 | 3.3E-20 | 686 | 777 | No hit | No description |
Pfam | PF03101 | 5.4E-11 | 916 | 1007 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.1E-19 | 1131 | 1206 | IPR018289 | MULE transposase domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0016787 | Molecular Function | hydrolase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1207 aa Download sequence Send to blast |
MATPNPPPPQ QDEPSSSADP KAKKDYSTAI LERKKSPNRL VVDEATNDDN SVVALHPDTM 60 ERLQLFRGDT VLLKGKKRKD TICIVLADDT CEEPKVRMNK TVRKNLRVRL GDVVSVHQCP 120 DVKYGKRVHI LPIDDTVEGI TGNLFDAFLK LASKNLFTNI VFVLCFSAYF LEAYRPLRKG 180 DLFLVRGGMR SVEFKVIETD PAEYCIVAPD TEIFCDGEPV KREDEERLDD VGYDDVGGVR 240 KQMAQIRELV ELPLRHPQLF KSIGVKPPKG ILLFGPPGSG KTLIARAVAN ETGAFFFLIN 300 GPEIMSKLAG ESESNLRKAF EEAEKNAPSI IFIDEIDSIA PKREKTNGEV ERRIVSQLLT 360 LMDGLKSRAH VIVMGATNRP NSIDPALRRF GRFDREIDIG VPDEVGRLEV LRIHTKNMKL 420 AEDVELEHIS RDTHGYVGAD LAALCTEAAL QCIREKMDII DLEDETIDAE ILNSMAVTND 480 HFKTALTTSN PSALRETVVE VPNVSWEDIG GLENVKRELQ ETVQYPVEHP EKFEKFGMSP 540 SKGVLFYGPP GCGKTLLAKA IANECQANFI SIKGPELLTM WFGESEANVR EIFDKARGSA 600 PCVLFFDELD SIATQRGSSV GDAGGAADRV LNQLLTEMDG MNAKKTVFII GATNRPDIID 660 PALLRPGRLD QLIYIPLPDV ESRHQIFKAC LRKSPLAKDI DLSALAKYTQ GFSGADITEI 720 CQRACKYAIR ENIEKDIERE RRRKDNPEAM EEDEVDEVAE IRAAHFEESM KYARRSVSDA 780 DIRKYQAFAQ TLQQSRGFGS EFRCWDPTQI ELAGGHLFEN SRRSQHRPRP RGFLREREYH 840 SETTSIRSNQ GSWGAGGEGE ESYVQGNFSV DNHEDSEGLL HADDVMQDDS DDEDVSSQPL 900 SPYVGMAFDT FEDAQKFYND YAFKLGFGTQ ISSTKKPDKP ETSSTSESIA TETSNSSRRP 960 GAEMDVTRTR QKNRILRHDC KAHMIVGLRE GRLTVTCFVA EHTHPLMQQP ERVRYYRSHR 1020 KIPAEDYELL LTLHDINLSN SDCMSFLGRI HGGDPRILPY VKRDVVNERA KLQEAITQQD 1080 MDMTVKYFER RKAENPEFFF AKQKDPATNF VTALFWVDGR ARALYPKYKD CVFFDITFCT 1140 NRYNMPFGPI VGINNHLQTI SLGCALLPDE NIETFKWVFE QWMVVMDNDH PKNIMTDQDQ 1200 AMATTIE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1r7r_A | 0.0 | 15 | 803 | 2 | 772 | Transitional endoplasmic reticulum ATPase |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion) (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248408 | 0.0 | AK248408.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf132h22, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169039.1 | 0.0 | cell division control protein 48 homolog E-like | ||||
Swissprot | Q9LZF6 | 0.0 | CD48E_ARATH; Cell division control protein 48 homolog E | ||||
TrEMBL | M8CGS3 | 0.0 | M8CGS3_AEGTA; Cell division control 48-E-like protein | ||||
STRING | EMT26392 | 0.0 | (Aegilops tauschii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-36 | FAR1-related sequence 5 |