PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT26258
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 480aa    MW: 51965.7 Da    PI: 7.2322
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT26258genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS283.65.5e-871214792374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                + L ++A+a ++g+ + a+++Larl+++  p g+p+ R a+y+ eAL   la+      +  +++ ts+ +++ +laa+k fs++sP+l+f+++ta qa+
  EMT26258 121 LDELAAAAKAAEAGNSTGAREILARLNHQLPPLGKPFLRSASYLREALLLALAD-----GHHGASRITSPLDVALKLAAYKSFSDLSPMLQFANFTATQAL 216
               57899*************************************************.....444455556666799*************************** PP

      GRAS 103 leavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
               l++++ +  +++HiiDfd++ G+QW++++q+La R+       p l++T+++s +s++  el+ t+++L++fA+ lg+pfefn++   +l+++++ eL   
  EMT26258 217 LDEIACSaaSCIHIIDFDLGVGGQWASFMQELAHRRgtggVALPLLKLTAFVSDASHHPLELHLTQDNLTQFAADLGIPFEFNAV---SLDAFSPAELISP 314
               **988776699************************976544599****************************************8...99********666 PP

      GRAS 198 p.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
               + +E +aV+l +          +l+     +L+lvk+l Pk+vv ++  ad+ + +F ++fl++++ ++ l+dsl+a  + +++ + k+E++l++++++++
  EMT26258 315 TgDEIVAVSLPVGCSARA---PPLAV----ILRLVKQLGPKIVVAMDYGADRADLPFSQHFLHCFQSCMFLLDSLDAA-GIDADSACKIEKFLIQPRVEDA 407
               689********9777665...55555....*********************************************888.7899****************** PP

      GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               v  + +       ++ +Wr+ + +aGF+pvpls+ a++qa++ll++v+++g++ve++  +l+l+W++ +LvsvSaWr
  EMT26258 408 VLGRRKT-----DKAVSWRNVFAAAGFTPVPLSNLAEAQADCLLKRVQVRGFHVEKRGVALTLYWQRGELVSVSAWR 479
               *987776.....7889************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.22494459IPR005202Transcription factor GRAS
PfamPF035141.9E-84121479IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MLFHEGIDTK PPLLGPQSHG LFNQYQHQHQ HQPPPPAAAF FMPLASFSDH NQRSQLHQPP  60
PKRHHSVPDD LYLTRNHLGT SAAAAFPLLH GSLPFQLRPS PPPLRGAMKT TAAEAAQPQL  120
LDELAAAAKA AEAGNSTGAR EILARLNHQL PPLGKPFLRS ASYLREALLL ALADGHHGAS  180
RITSPLDVAL KLAAYKSFSD LSPMLQFANF TATQALLDEI ACSAASCIHI IDFDLGVGGQ  240
WASFMQELAH RRGTGGVALP LLKLTAFVSD ASHHPLELHL TQDNLTQFAA DLGIPFEFNA  300
VSLDAFSPAE LISPTGDEIV AVSLPVGCSA RAPPLAVILR LVKQLGPKIV VAMDYGADRA  360
DLPFSQHFLH CFQSCMFLLD SLDAAGIDAD SACKIEKFLI QPRVEDAVLG RRKTDKAVSW  420
RNVFAAAGFT PVPLSNLAEA QADCLLKRVQ VRGFHVEKRG VALTLYWQRG ELVSVSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2619547980375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719460.0AK371946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143M04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185793.10.0scarecrow-like protein 6
TrEMBLM8BWU00.0M8BWU0_AEGTA; Uncharacterized protein
STRINGEMT262580.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-89GRAS family protein