 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
EMT26194 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
NAC |
| Protein Properties |
Length: 396aa MW: 42380.4 Da PI: 7.7492 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT26194 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 162.3 | 1.8e-50 | 28 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel 99
lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++ ++e+
EMT26194 28 LPPGFRFHPTDEELVVHYLKKKAAKVPLPV-TIIAEVDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMASgcGREK 127
79****************************.89***************988899****************************************9999999 PP
NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
vg+kk Lvfy+g+ pkg kt+ +m+eyrl
EMT26194 128 VGVKKALVFYRGKPPKGLKTNGIMQEYRL 156
***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 396 aa
Download sequence Send
to blast |
MGSSDSSSGS APPRHQPPPP QQGSAPELPP GFRFHPTDEE LVVHYLKKKA AKVPLPVTII 60
AEVDLYKFDP WELPEKATFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPIMA 120
SGCGREKVGV KKALVFYRGK PPKGLKTNGI MQEYRLTDAS SSATTSRPPP VTGGSRAASL 180
RLDDWVLCRI YKKINKAAAG DQQRSMECED SVEDAVTAYP PYATAGMTGA GAHGSNYDSL 240
LHHQDSHEDN FLDGLLTAED AGLSAGATSL SHLAAAARAS PAPTKQFLAP SSSTPFNWLD 300
ASTVGILPQA RNFPGFNRSR NVGNMSLSST ADMAVDNGGG NAINAMPPFM NHLPVQDGTY 360
HQQHVILGAP LAPEATAAAT SAFQHPVQIS GVNWNP
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-70 | 28 | 197 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-70 | 28 | 197 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-70 | 28 | 197 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-70 | 28 | 197 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-70 | 28 | 197 | 17 | 169 | NAC domain-containing protein 19 |
| 4dul_B | 2e-70 | 28 | 197 | 17 | 169 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KM820890 | 0.0 | KM820890.1 Triticum aestivum cultivar Chinese Spring NAC transcription factor NAM-D2 (NAM-D2) mRNA, complete cds. |
