PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT26088
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 542aa    MW: 60354.7 Da    PI: 6.6896
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT26088genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.4e-111762591097
               HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
        B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
               +lk + + lp k +e+++++ +++ t++le ++ + + v+   +k+++  +vl+ GW++ v+an+++e+D +vF  +g  +++l v+++
  EMT26088 176 NLKGCSVNLPLKLVEHFKED-TSKATIQLEAPNDNIYGVEA--CKHGDDqTVLQYGWNNLVDANRIQENDLLVFIIKG--KKRLEVRIL 259
               5677999*******777666.5678****************..55554449************************776..444577776 PP
2B341.62.2e-13443538599
               -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
        B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                ++++  + ++l +  ++ ++h  ++ +++++l+l+ e + ++ + +l ++++++r ++++GWk+Fv +n+++egD+++F++ ++ ++ +++v ++r+
  EMT26088 443 VMTKSRINADQLGIRMEYGARHiPHI-NRKTDLMLQAEGStEQHTCRLVIDQSGKR-WIRRGWKDFVTENKVREGDICLFERGEStKKLRMMVYFIRR 538
               56777888889*******99997444.35578999985555777777766777766.89**********************98777999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-15160261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-15160261IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-11164259No hitNo description
SMARTSM010193.3E-4166262IPR003340B3 DNA binding domain
PROSITE profilePS508639.855167262IPR003340B3 DNA binding domain
PfamPF023629.1E-9174258IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-15432535IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-15433538IPR015300DNA-binding pseudobarrel domain
CDDcd100173.37E-12438534No hitNo description
PROSITE profilePS508639.347439539IPR003340B3 DNA binding domain
SMARTSM010193.2E-6440539IPR003340B3 DNA binding domain
PfamPF023627.0E-12442538IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MAQPARAGEP QSVHGNNQLQ HRGEHELVHL VPLPPQPPEQ RRGGLELPAQ RVGLEERDEG  60
RRVPLGQGVE HPARAGQGPQ LGVQVDQDVG AEEVEVQAAA PTKLKSSKTV NLVTLTTFSE  120
LWRCSTCRNL RSSCAECILS GCHLTKAQDE KVCEIACTVR SQVPLYVAAM NKSNVNLKGC  180
SVNLPLKLVE HFKEDTSKAT IQLEAPNDNI YGVEACKHGD DQTVLQYGWN NLVDANRIQE  240
NDLLVFIIKG KKRLEVRILG TSVHQRTSSC FGTGNISSTQ EIREDSLEIT DPPPHTDYYV  300
SSSDDDHIME EGYYVSSSDD DRIAEEDYVS SSDGDHIVEE GTRKSCRRQK QAPSCHAKAQ  360
KVASTSSPSA AKSGYEAHKL NERASVEFGV NLEPHSSTSN LEGPSQYPYI LSEGRASLSS  420
AEKKKVEEKV QAIQSELPIY VVVMTKSRIN ADQLGIRMEY GARHIPHINR KTDLMLQAEG  480
STEQHTCRLV IDQSGKRWIR RGWKDFVTEN KVREGDICLF ERGESTKKLR MMVYFIRRSS  540
QT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-108HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM8BW760.0M8BW76_AEGTA; B3 domain-containing protein
STRINGEMT260880.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16378713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-06B3 family protein