PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT25881 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 412aa MW: 44349.9 Da PI: 4.2062 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.8e-18 | 50 | 99 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g EMT25881 50 RFGGVRQRP-AGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 99 678******.8*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.38E-28 | 49 | 106 | No hit | No description |
SMART | SM00380 | 9.0E-33 | 50 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-27 | 50 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.572 | 50 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-18 | 51 | 107 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.4E-13 | 51 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-8 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-8 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MARKRKASDD VSDADIDVGI PLSLASTDAW TTSTVAAATA ARQQQRGRKR FGGVRQRPAG 60 RWVAEIKDTI QKIRVWLGTF DTAEEAARAY DEAACLLRGA NTRTNFWPRP SPPAALQPPP 120 PPAMLSMQAP ALPSKVSNLL LLRLKARNQQ LLLNDATAPQ EAALLQQQMQ KQMSSSTSSC 180 QESYIHGRDD EYCFQVDDFL SEECNNSPEM EEEEEEEVEE EEEVEEEEEL DFQFMDKPAA 240 AGDEDAGLRS PVEMGAAALG GSAPVEANDV DGEPATAVQE AMRRMDYERK VSASLYALSG 300 VSECLRMRLG GGASAARDQL SGLREACRKK QRLAVQQPAS EQSSEPAAAA ADHGTEEDGK 360 AYVQEECSGS SSGSSSLTEA GSSSSLEAAN GSSDGDVLLW SSLDLAPICY MA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171738.1 | 0.0 | uncharacterized protein LOC109757323 | ||||
TrEMBL | M8CQG0 | 0.0 | M8CQG0_AEGTA; Ethylene-responsive transcription factor RAP2-11 | ||||
STRING | EMT25881 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-15 | related to AP2 11 |