PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT25672 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | B3 | ||||||||
Protein Properties | Length: 544aa MW: 60474.3 Da PI: 9.8268 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.8 | 3.1e-16 | 440 | 539 | 8 | 99 |
-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 8 sdvlksgrlvlpkkfaeeh........ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 s++++ l+++k++++++ + k++ + l+le e g r+W +l r + +r ++ kGW +F+++n+L++ D ++Fkl+++ ++ +++v ++r EMT25672 440 SSNSSGPYLTFSKQYVSRYlekqyftrHHAKKNVISLVLEREGGsRRWHTEL--RLGNNRPMIVKGWTSFARDNRLQVDDLCLFKLMRNeETLKMMVYIIR 538 555555566666666666666666665333446678999999889*******..77888899*************************999*********99 PP S CS B3 99 k 99 + EMT25672 539 R 539 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.019 | 229 | 331 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.04E-10 | 234 | 325 | No hit | No description |
SuperFamily | SSF101936 | 2.35E-11 | 235 | 323 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-11 | 237 | 320 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.332 | 244 | 328 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.80E-13 | 421 | 538 | No hit | No description |
SuperFamily | SSF101936 | 8.04E-14 | 434 | 542 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.1E-12 | 434 | 540 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-14 | 438 | 541 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.8E-14 | 439 | 539 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.688 | 464 | 540 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MTNVEQRKFV VRVHILNKAC TDGTTQSQAG EGSDSDRRPK EGSSHYYKAA NTPAVSYTSK 60 DFSEENPSAY ESVQLHDPRM PSKDYVLAGK CDLTLAQEKK IQALLGKIRP EIPVLVAQMK 120 KSNVESGRGN LHQRVTKSMV LLDGPPACPL AAQLAASCTP MGLLPGATPT RPWKFAAAAA 180 GLAFTADMGT WPMFYSSSES ACPLMSVVEL RSIIEPDRLA SSALRPGVNK VELLTPVSVF 240 RQAIPKDYAL KYFPCESTSI KLQLPNKNKA WKCRLHIRPS GVHNPGRRSL YWRLFAVDNH 300 VREGDICLFQ PMTNDKHRTF IVIVHLLHKA SVESSPGGRS DVGSNHGRRS AKMVLTANVN 360 EEPATDGEEI SPSGHENAGD SDDSEGASEP LFVAPDRPRL TDAQKKKVLE KVHAIGSESL 420 PICVIVMNNT SVRLCKSSNS SNSSGPYLTF SKQYVSRYLE KQYFTRHHAK KNVISLVLER 480 EGGSRRWHTE LRLGNNRPMI VKGWTSFARD NRLQVDDLCL FKLMRNEETL KMMVYIIRRK 540 KCLA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155765.1 | 1e-106 | B3 domain-containing protein Os03g0619600-like | ||||
Refseq | XP_020198702.1 | 1e-106 | B3 domain-containing protein Os03g0619600-like | ||||
TrEMBL | M8CEW4 | 0.0 | M8CEW4_AEGTA; B3 domain-containing protein | ||||
STRING | EMT25672 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |